View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_29 (Length: 249)
Name: NF12988_low_29
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 127; Significance: 1e-65; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 40460838 - 40460972
Alignment:
| Q |
1 |
tatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattgcactaattgaaaaagaagcatt |
100 |
Q |
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| T |
40460838 |
tatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattacactaattgaaaaagaagcatt |
40460937 |
T |
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| Q |
101 |
aatgcttctttaatatagtaaaattacatactgaa |
135 |
Q |
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| T |
40460938 |
aatgcttcgttaatatagtaaaattacatactgaa |
40460972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 40460994 - 40461099
Alignment:
| Q |
128 |
atactgaattaatctcagacgaagggacaaagattctttgtcctcaatttgaaggtacctacctacctacaaaggttaaaggccgcttaattcgttcatc |
227 |
Q |
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||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40460994 |
atactgaattaatctcagacgaagggaaaaagattttttgtcctcaatttgaaggtacctacctacctacaaaggttaaaggccgcttgattcgttcatc |
40461093 |
T |
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| Q |
228 |
acaaat |
233 |
Q |
| |
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|||||| |
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| T |
40461094 |
acaaat |
40461099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 40379010 - 40378875
Alignment:
| Q |
1 |
tatagagtattttacaaagttatctttcatttgtgttagtagaaaaagcaattagaagaatttgaaaaggagaaattgcactaatt--------gaaaaa |
92 |
Q |
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||||| |||||||||||||||||| ||||| |||||||||||||||| ||||||||||| |||||| |||||||||||||||||| |||||| |
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| T |
40379010 |
tatagtgtattttacaaagttatcattcatctgtgttagtagaaaaataaattagaagaaattgaaagggagaaattgcactaattgaaagagagaaaaa |
40378911 |
T |
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| Q |
93 |
gaagcattaatgcttctttaatatagtaaaattaca |
128 |
Q |
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| T |
40378910 |
aaagcattaacgcttcgttaatatagtaaaattaca |
40378875 |
T |
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