View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_32 (Length: 238)
Name: NF12988_low_32
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 3e-87; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 4 - 222
Target Start/End: Complemental strand, 36765830 - 36765608
Alignment:
| Q |
4 |
atactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcatttccacata |
103 |
Q |
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| T |
36765830 |
atactcatttaatagcatagattataatagaaagtaaagaaaaaaggtaacaataaagtaaaggaaacaaatttgacaaacaagtaggcatttctacata |
36765731 |
T |
|
| Q |
104 |
aaacatg----nnnnnnnnnaggaaaacattataatgcacaaaccatgattcttaactcacaatggtccatttcatctaacaactcccaaacctaatttt |
199 |
Q |
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| T |
36765730 |
aaacatgtttttttttttttagcaaaacattataatgcacaaaccatgattctgaactcacaatggtccatttcatctaacaactcccaaacctaatttt |
36765631 |
T |
|
| Q |
200 |
acaaacacatgaaacctcaattg |
222 |
Q |
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||||||||||||||||||||||| |
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| T |
36765630 |
acaaacacatgaaacctcaattg |
36765608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 4 - 96
Target Start/End: Complemental strand, 36747394 - 36747302
Alignment:
| Q |
4 |
atactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcattt |
96 |
Q |
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| T |
36747394 |
atactcatttaataacatagattataatagaaagtaaagaaaaaaggtagcaataaagtaaagaaaacaaatttgacaaacaagtaggcattt |
36747302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 6 - 96
Target Start/End: Complemental strand, 36754790 - 36754702
Alignment:
| Q |
6 |
actcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcattt |
96 |
Q |
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| T |
36754790 |
actcatttaataaca--gattataatagaaagtaaagaaaaaaggtagcaataaagtaaaggaaacaaatttgacaaacaagtaggcattt |
36754702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 88
Target Start/End: Complemental strand, 36770720 - 36770636
Alignment:
| Q |
4 |
atactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagt |
88 |
Q |
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|||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||| ||||| |
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| T |
36770720 |
atactcatataataacatagattataatagaaagaaaagaaaaaaggcaacaataaagtaaaggaaacaaattcgacaaccaagt |
36770636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 36754625 - 36754560
Alignment:
| Q |
157 |
tcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatg-aaacctcaatt |
221 |
Q |
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| T |
36754625 |
tcacaatggcccatttcatctaactacttccaaacctaattttacaaacacatgaaaacctcaatt |
36754560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 36747225 - 36747160
Alignment:
| Q |
157 |
tcacaatggtccatttcatctaacaactcccaaacctaattttacaaacacatg-aaacctcaatt |
221 |
Q |
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||||||||| |||||||||||||| ||| ||||||| ||||||||||||||||| ||||||||||| |
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|
| T |
36747225 |
tcacaatggcccatttcatctaactacttccaaaccaaattttacaaacacatgaaaacctcaatt |
36747160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 158 - 202
Target Start/End: Complemental strand, 36770425 - 36770381
Alignment:
| Q |
158 |
cacaatggtccatttcatctaacaactcccaaacctaattttaca |
202 |
Q |
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||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
36770425 |
cacaatggtccatttcatctaactactcccacacctaattttaca |
36770381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 23439015 - 23439105
Alignment:
| Q |
4 |
atactcatttaatagcatagattataatagaaagtaaagaaaaaaggttacaataaagtaaaggaaacaaatttgacaaacaagtaggcat |
94 |
Q |
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|||| ||| ||||||||||||||| |||| |||| ||| | | |||| | | |||||||||||||||||||||||||||| |||||||| |
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| T |
23439015 |
atacccatataatagcatagattagaatataaagaaaacaggacaggtaatgacaaagtaaaggaaacaaatttgacaaacaggtaggcat |
23439105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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