View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_35 (Length: 225)
Name: NF12988_low_35
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 35935624 - 35935486
Alignment:
| Q |
11 |
gaacctgtggccggaagaacacttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaata |
110 |
Q |
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| T |
35935624 |
gaacctgaggccggaagagcacttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaata |
35935525 |
T |
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| Q |
111 |
gcctcacaaactgttttatgctgataataacttttgtcc |
149 |
Q |
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| T |
35935524 |
gcctcacaaactgttttatgctgataataacttttgtcc |
35935486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 35928966 - 35928863
Alignment:
| Q |
32 |
cttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaatagcctcacaaactgttttatgc |
131 |
Q |
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| T |
35928966 |
cttttctattattttgtggagtctccatataactcttccactaaacctttagttttgtggctcaatggaggtataaattgcct--caaacttttttatgc |
35928869 |
T |
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| Q |
132 |
tgataa |
137 |
Q |
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|||||| |
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| T |
35928868 |
tgataa |
35928863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 35911633 - 35911537
Alignment:
| Q |
31 |
acttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaatagcctcacaaactgtttt |
127 |
Q |
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| T |
35911633 |
acttttctattattttgtggagtctccatataactcttccactaaacctttagtattatggctcaatggaggtaaaaattgcattagaaactgtttt |
35911537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 122
Target Start/End: Complemental strand, 35941154 - 35941063
Alignment:
| Q |
31 |
acttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaatagcctcacaaact |
122 |
Q |
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| T |
35941154 |
acttttctattattttgtggagtctccatgtaactcttctactaaacctttagtattatggctcaatggaggtaaaaatagtctcataaact |
35941063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 14 - 107
Target Start/End: Complemental strand, 35916037 - 35915944
Alignment:
| Q |
14 |
cctgtggccggaagaacacttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaa |
107 |
Q |
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| T |
35916037 |
cctgaggctggaagagaacttttctattattttgtggagtctccatataactcttccactaaacctttagtactgtggttcaatggaggtaaaa |
35915944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Complemental strand, 35922306 - 35922212
Alignment:
| Q |
14 |
cctgtggccggaagaacacttttttattattttgtggagtctccatataactcttcaactaaaccattagtattgtggctcaatggaggtaaaaa |
108 |
Q |
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| T |
35922306 |
cctgaggctggaagagaacttttctattattttgtggaatctccacataactcttatactaaacccttaatattgtggcttaatggaggtaaaaa |
35922212 |
T |
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