View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12988_low_4 (Length: 516)
Name: NF12988_low_4
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 12)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 5885723 - 5886207
Alignment:
| Q |
13 |
aaaataacagatctacacactcttgacaaaactatggcttccatcctaaaggaatactagggtttgtaattaactgtttggctgcttgatgatggcaatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5885723 |
aaaataacagatctacacactcttgacaaaactatggcttccatcctaaaggactactagggtttgtaattaactgtttggctgcttgatgatggcaatg |
5885822 |
T |
|
| Q |
113 |
ataacctgagggaatctgtgtaattatccaattggtccacttccatattttgatcttgtggataaataatactaagagcttcatgttccttggaatcaga |
212 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
5885823 |
ataacctgagggcatctgtgtaattatccaattggtccacttccatattttgatcttgtggataaataatactaagagcttcatgtttcttggaatcaga |
5885922 |
T |
|
| Q |
213 |
tgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaaccaagtgatgatcatgacat |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5885923 |
tgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaaccaagtgatgatcatgacat |
5886022 |
T |
|
| Q |
313 |
tgatcatattgttgtggcattaatacaattgggttgactaaattgtgatgttgggtggtatcacttggattttctttatttggattgatatgaagagcca |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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|
| T |
5886023 |
tgatcatattgttgtggcattaatacaattgggttgactaaattgtgatgttggctggtatcacttggattttctttaattcgattgatatgaagagcca |
5886122 |
T |
|
| Q |
413 |
cacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5886123 |
cacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
5886207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 5848109 - 5848598
Alignment:
| Q |
13 |
aaaataacagatctacacactcttgacaaaactatggcttccatcctaaaggaatactagggtttgt-----aattaactgtttggctgcttgatgatgg |
107 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
5848109 |
aaaataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatgg |
5848208 |
T |
|
| Q |
108 |
caatgataacctgagggaatctgtgtaattatccaattggtccacttccatattttgatcttgtggataaataatactaagagcttcatgttccttggaa |
207 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848209 |
caatgataacctgagggcatcaatgtaattatccaattggttagcttccatattttgaccttgtggataaataatactaagagcttcatgttccttggaa |
5848308 |
T |
|
| Q |
208 |
tcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaaccaagtgatgatcat |
307 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5848309 |
tcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggcaaaatattgggttcagtttcaaccaagtgatgatcat |
5848408 |
T |
|
| Q |
308 |
gacattgatcatattgttgtggcattaatacaattgggttgactaaattgtgatgttgggtggtatcacttggattttctttatttggattgatatgaag |
407 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5848409 |
gacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttatttctattgatatgaag |
5848508 |
T |
|
| Q |
408 |
agccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
497 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5848509 |
agccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
5848598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 5841399 - 5841888
Alignment:
| Q |
13 |
aaaataacagatctacacactcttgacaaaactatggcttccatcctaaaggaatactagggtttgta-----attaactgtttggctgcttgatgatgg |
107 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5841399 |
aaaataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatgg |
5841498 |
T |
|
| Q |
108 |
caatgataacctgagggaatctgtgtaattatccaattggtccacttccatattttgatcttgtggataaataatactaagagcttcatgttccttggaa |
207 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5841499 |
caatgataacctgagggcatcaatgtaattatccaattggttagtttccatattttgaccttgtggataaataatactaagagcttcatgttccttggaa |
5841598 |
T |
|
| Q |
208 |
tcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaaccaagtgatgatcat |
307 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5841599 |
tcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggcaaaatattgggttcagtttcaaccaagtgatgatcat |
5841698 |
T |
|
| Q |
308 |
gacattgatcatattgttgtggcattaatacaattgggttgactaaattgtgatgttgggtggtatcacttggattttctttatttggattgatatgaag |
407 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5841699 |
gacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttatttctattgatatgaag |
5841798 |
T |
|
| Q |
408 |
agccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
497 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5841799 |
agccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
5841888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 13 - 497
Target Start/End: Original strand, 5847553 - 5848042
Alignment:
| Q |
13 |
aaaataacagatctacacactcttgacaaaactatggcttccatcctaaaggaatactagggtttgta-----attaactgtttggctgcttgatgatgg |
107 |
Q |
| |
|
||||||| ||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5847553 |
aaaataaaagatctacatactcttgacataactatggctgccatcctaaaggaatactagggtttgtattgtaattaactgtttggctgcttgatgatgg |
5847652 |
T |
|
| Q |
108 |
caatgataacctgagggaatctgtgtaattatccaattggtccacttccatattttgatcttgtggataaataatactaagagcttcatgttccttggaa |
207 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5847653 |
caatgataacctgagggcatcaatgtaattatccaattggttagtttccatattttgaccttgtggataaataatactaagagcttcatgttccttggaa |
5847752 |
T |
|
| Q |
208 |
tcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaaccaagtgatgatcat |
307 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||| |
|
|
| T |
5847753 |
tcaaatgaatctaggatgcaacaatcatggtcctcaaggctttgatcattgactaattgaggcaaaatattgggttcagtttcaaccaagtgatgatcat |
5847852 |
T |
|
| Q |
308 |
gacattgatcatattgttgtggcattaatacaattgggttgactaaattgtgatgttgggtggtatcacttggattttctttatttggattgatatgaag |
407 |
Q |
| |
|
||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
5847853 |
gacattgatcatattgttgtgccattgatgcaattgggttgactaaattgtgatgttgggtagtatcacttggattttctttatttctattgatatgaag |
5847952 |
T |
|
| Q |
408 |
agccacacaatctaatgaccatggatcttcatcaggaaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
497 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5847953 |
agccacacactctaatgaccatgtatcttcatcagggaaaggattagatggtatttgattctcaatgtcaaggaaattgggattataatg |
5848042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 194 - 274
Target Start/End: Original strand, 5886324 - 5886407
Alignment:
| Q |
194 |
catgttccttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaa |
274 |
Q |
| |
|
|||||||||||||||||||||||| | ||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5886324 |
catgttccttggaatcagatgaataatctaggatgctacaagcataatcctcaaggctttgatcattgactaatttaggcacaa |
5886407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 5842004 - 5842131
Alignment:
| Q |
196 |
tgttccttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaa |
292 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||||||||| ||||||||||||||| || ||| ||||| |
|
|
| T |
5842004 |
tgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaat---ggcttcatgttcaa |
5842100 |
T |
|
| Q |
293 |
ccaagtgatgatcatgacattgatcatattg |
323 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |
|
|
| T |
5842101 |
ccaagttatgatcatgatattgatcatattg |
5842131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 196 - 323
Target Start/End: Original strand, 5848714 - 5848841
Alignment:
| Q |
196 |
tgttccttggaatcagatgaat---ccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcacaataatgggttccatttcaa |
292 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| ||| ||| | ||||||||||||||||||| ||||||||||||||| || ||| ||||| |
|
|
| T |
5848714 |
tgttccttggaatcagatgaataatctaggatgctacatgcataattttcaaggctttgatcattgagtaatttaggcacaat---ggcttcatgttcaa |
5848810 |
T |
|
| Q |
293 |
ccaagtgatgatcatgacattgatcatattg |
323 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| |
|
|
| T |
5848811 |
ccaagttatgatcatgatattgatcatattg |
5848841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 273
Target Start/End: Original strand, 5958747 - 5958832
Alignment:
| Q |
188 |
gagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcaca |
273 |
Q |
| |
|
||||||||||||| | ||||| ||||||||| ||||||| |||| ||| |||||||||||||||| ||| |||||| ||||||| |
|
|
| T |
5958747 |
gagcttcatgttcttgggaattagatgaatctaggatgctacaagcataatcctcaaggctttgatgattttctaattcaggcaca |
5958832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 188 - 271
Target Start/End: Original strand, 5983289 - 5983372
Alignment:
| Q |
188 |
gagcttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggca |
271 |
Q |
| |
|
||||||||||||| | |||| ||||||||| |||||| |||| ||| |||||||||||||||| ||||||||||| ||||| |
|
|
| T |
5983289 |
gagcttcatgttcttgcgaattagatgaatctaggatgttacaagcataatcctcaaggctttgatgattgactaattcaggca |
5983372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 238 - 271
Target Start/End: Original strand, 5920134 - 5920167
Alignment:
| Q |
238 |
tcctcaaggctttgatcattgactaatttaggca |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5920134 |
tcctcaaggctttgatcattgactaatttaggca |
5920167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 152 - 186
Target Start/End: Original strand, 5920066 - 5920100
Alignment:
| Q |
152 |
cttccatattttgatcttgtggataaataatacta |
186 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
5920066 |
cttccatattttgatcttgtggataagtaatacta |
5920100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Original strand, 5947683 - 5947764
Alignment:
| Q |
192 |
ttcatgttccttggaatcagatgaatccaggatgcaacaatcatgttcctcaaggctttgatcattgactaatttaggcaca |
273 |
Q |
| |
|
||||||||| | ||||| ||||||||| ||||||| | || | | |||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
5947683 |
ttcatgttcttgggaattagatgaatctaggatgctagaagcgtaatcctcaaggctttgatgattggctaattcaggcaca |
5947764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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