View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_5 (Length: 488)
Name: NF12988_low_5
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 16 - 488
Target Start/End: Original strand, 2243829 - 2244313
Alignment:
| Q |
16 |
catattctagactaatttcatggggaagcttttggtcatcatc---cccaaattcagatacagttttgctaattaccaaaatctgtggcatgnnnnnnnt |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| | |
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| T |
2243829 |
catattctagactaatttcatggggaagcttttggtcatcatcatccccaaattcagatacagttttgct---taccaaaatctgtggcatgaaaaaaat |
2243925 |
T |
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| Q |
113 |
gtaaaagcaacacgtttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggctt |
212 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
2243926 |
gtaaaa--------tttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagttttgtcaggctt |
2244017 |
T |
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| Q |
213 |
acgggagtatgatcctagcacaaaagaaatggtatgaggttatgagaactaaaaacaaattaaaattggaaa----tatttataaggaatacaattttat |
308 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
2244018 |
acgggagtatgatcctagcacaaaagaaatggcacgaggttatgagaactaaaaacaaattaaaattggaaatatttatttataaggaataaaattttat |
2244117 |
T |
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| Q |
309 |
tcaacccctttattaaattaggttatgttagtcctaatttattattatacgctgcaaccttttaacaaagcaaacttcgtctttactcttcaatttta-- |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2244118 |
tcaacccctttattaaattaggttatgttagtcctaatttattattatacgctgcaaccttttaacaaagcaaacttcgtctttactcttcaattttata |
2244217 |
T |
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| Q |
407 |
--------------tggaataatatgatgggttgactgcagcacaaatgatttttattttatgtgttgaaacatatctaattcattatttcaactt |
488 |
Q |
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| T |
2244218 |
taatcttctttttttggaataatatgatgggttgactgcagcacaaatgatttttattttatgtgttgaaacatatctaattcattatttcaactt |
2244313 |
T |
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Back To:
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Target: chr5 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 31780571 - 31780794
Alignment:
| Q |
16 |
catattctagactaatttcatggggaagcttttggtcatcatccccaaattcagatacagtt----ttgctaattaccaaaatctgtggcatgnnnnnnn |
111 |
Q |
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|||||||||||||||||||||| |||||| || |||||| |||||||||||||||||||| | ||||| ||||||||||||||||||| |
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| T |
31780571 |
catattctagactaatttcatgtggaagcctt-ggtcattatccccaaattcagatacagctagcattgct---taccaaaatctgtggcatgaaaaaaa |
31780666 |
T |
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| Q |
112 |
tgtaaaagcaacacgtttatagaaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggct |
211 |
Q |
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| T |
31780667 |
tgtaaaagcaacatgtttaaagaaa--ggatgttacactattcacaactattggatcactcaaaggcttaataaacttgtgtgccaagtttcgtcaggtt |
31780764 |
T |
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| Q |
212 |
tacgggagtatgatcctagcacaaaagaaa |
241 |
Q |
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| T |
31780765 |
tacggaagtatgattctagcacaaaagaaa |
31780794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 29059349 - 29059248
Alignment:
| Q |
134 |
aaaaaggatgttacattattcacaactattggatcagtcaaaggcttaataaacttgcgcgccaagtttcgtcaggcttacgggagtatgatcctagcac |
233 |
Q |
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|||||||||| |||||||||||||| ||||||||||| |||||| || |||||| |||||||||||| |||||| ||| |||||||||||||||| || |
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| T |
29059349 |
aaaaaggatgctacattattcacaataattggatcagtggaaggctaaagaaacttacgcgccaagttttgtcaggtttatgggagtatgatcctagtac |
29059250 |
T |
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| Q |
234 |
aa |
235 |
Q |
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|| |
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| T |
29059249 |
aa |
29059248 |
T |
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