View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_6 (Length: 481)
Name: NF12988_low_6
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 388990 - 388519
Alignment:
| Q |
1 |
ataccggaaattataattaaaatgtgtgaacacgtcattt-aaacattggttactctttccactttgtcatagaaattgcatttccccgtttcttacaag |
99 |
Q |
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| T |
388990 |
ataccggaaattataattaaaatgtgtgaacacatcattttaaacattggttactctttccactttgtcatagaaattgcatttccccgtttcttacgag |
388891 |
T |
|
| Q |
100 |
tcatcacgccatggaaaaatttaaagtgagcatttgctactttgagccataacaacctctcttttcgttgctacatactacaattgattcttgataaaga |
199 |
Q |
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| T |
388890 |
tcatcacgccatggaaaaatttagagtgagcatttgctactttgagccataacaacctctcttttcgttgctacatactacaattgattcttgataaaga |
388791 |
T |
|
| Q |
200 |
gaacacctaagataaaatagtccacagaacttccctttcaacaacatctaactcacctgctttatgttccatgtcaatgtgaaaaagaagttcatttgca |
299 |
Q |
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| T |
388790 |
gaacacctaagataaaatagtccacggaacttccctttcaacaacatctaactcacctgctttatgttccatgtcaatgtgaaaaagacgttcctttgca |
388691 |
T |
|
| Q |
300 |
gctttatgtttcctcttaatattcgcaccatgcaccagatgttagtctttcaagctagat-------ttcaacagtttaaatttttccttgagaataaaa |
392 |
Q |
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| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
388690 |
gttttatgtttcctattaatattcgcaccatgcaccagatgttagtctttcaagctagatttcagatttcaacggtttaaatttttccttgagaataaaa |
388591 |
T |
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| Q |
393 |
tctcctcaaccatctatctcaaaagttttccatttttcctttatgagttttttatacccaagaccttcaaac |
464 |
Q |
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||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
388590 |
tctcctcaaccgtctatctcaaaagtttgtcatttttcctttatgagttttttatacccaagaccttcaaac |
388519 |
T |
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