View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_7 (Length: 479)
Name: NF12988_low_7
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 24 - 289
Target Start/End: Complemental strand, 27145966 - 27145701
Alignment:
| Q |
24 |
gcttaaatgggatttacttaaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttcatttacaatggtgtgtggggttgacttatttagc |
123 |
Q |
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| T |
27145966 |
gcttaaatgggatttacttaaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttcatttacaatggtgtgtgtggttgacttatttagc |
27145867 |
T |
|
| Q |
124 |
atcatgtttgacaaacaatcttattgtagagaaaaaattgcattgtaatagactgcattataattaataagtgagatttgcttaaatggaatttaataac |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27145866 |
atcatgtttgacaaacaatcttattgtagagaaaaaattgcattgtaatagactgcattataattaataagtgagatttgcttaaatgggatttaataac |
27145767 |
T |
|
| Q |
224 |
ttttttgaaggtcttagattggagagatgttttttgttaaatgagaacattaaataaattgtataa |
289 |
Q |
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| T |
27145766 |
ttttttgaaggtcttagattggagagatgttttttgttaaatgagaacattaaataaattgtataa |
27145701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 287 - 470
Target Start/End: Complemental strand, 27145677 - 27145494
Alignment:
| Q |
287 |
taaggcttaagcaacaaaaaataggagctctatcgcagatgatcttagcatttttaatatttaattagttgagttagttaacctttgtttatgtttgaga |
386 |
Q |
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| T |
27145677 |
taaggcttaagcacccaaaaataggagctctatcgcagatgatcttagcatttttaatatttaattagttgagttagttaacctttgcttatgtttgaga |
27145578 |
T |
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| Q |
387 |
ccatcaaatatgattttttgttgtttatatttgagattagagagaataagtatctaaattatgattcagtcattcatctcactc |
470 |
Q |
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| T |
27145577 |
ccatcaaatatgattttttgttgtttatatttgagattagagagaataagtatctaaattatgattcagtcattcatctcactc |
27145494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 38780638 - 38780588
Alignment:
| Q |
43 |
aaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttcattt |
93 |
Q |
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| T |
38780638 |
aaaaaccaacacaattcaccccccttcttgtgttttttctcaccttcattt |
38780588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 43 - 79
Target Start/End: Complemental strand, 12397009 - 12396973
Alignment:
| Q |
43 |
aaaaaccaacacaattcaaccatcttcttgtgttttt |
79 |
Q |
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| T |
12397009 |
aaaaaccaacacaattcaactatcttcttgtgttttt |
12396973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 11222789 - 11222742
Alignment:
| Q |
43 |
aaaaaccaacacaattcaaccatcttcttgtgttttttcacaccttca |
90 |
Q |
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|||| |||||||||||||||| |||||||||||||||| |||||||| |
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| T |
11222789 |
aaaagccaacacaattcaacccccttcttgtgttttttctcaccttca |
11222742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 11513611 - 11513575
Alignment:
| Q |
54 |
caattcaaccatcttcttgtgttttttcacaccttca |
90 |
Q |
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| T |
11513611 |
caattcaaccaccttcttgtgttttttctcaccttca |
11513575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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