View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12988_low_9 (Length: 435)
Name: NF12988_low_9
Description: NF12988
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12988_low_9 |
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| [»] scaffold0372 (1 HSPs) |
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Alignment Details
Target: scaffold0372 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: scaffold0372
Description:
Target: scaffold0372; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 195 - 417
Target Start/End: Complemental strand, 12067 - 11848
Alignment:
| Q |
195 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
294 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12067 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
11968 |
T |
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| Q |
295 |
tgttgatcaagtcgatcttctcatatttttcaataa-cggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
393 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
11967 |
tgttgatcaag----tcttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
11872 |
T |
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| Q |
394 |
atttgagtttatttgggaaccttt |
417 |
Q |
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|||||||||||||||||||||||| |
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| T |
11871 |
atttgagtttatttgggaaccttt |
11848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 195 - 417
Target Start/End: Complemental strand, 21367542 - 21367323
Alignment:
| Q |
195 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
294 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21367542 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
21367443 |
T |
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| Q |
295 |
tgttgatcaagtcgatcttctcatatttttcaataa-cggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
393 |
Q |
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| T |
21367442 |
tgttgatcaag----tcttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
21367347 |
T |
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| Q |
394 |
atttgagtttatttgggaaccttt |
417 |
Q |
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|||||||||||||||||||||||| |
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| T |
21367346 |
atttgagtttatttgggaaccttt |
21367323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 21371156 - 21371003
Alignment:
| Q |
1 |
gaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaac |
100 |
Q |
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| T |
21371156 |
gaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaag |
21371057 |
T |
|
| Q |
101 |
taattaatcttgattaattaacataatttaatccacttagctgcatctgactaa |
154 |
Q |
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| T |
21371056 |
taattaatcttgattaattaacataagttaatccacttagctgcatctgactaa |
21371003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 21386401 - 21386554
Alignment:
| Q |
1 |
gaagaatgaagaaggagtgtgttttatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaac |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21386401 |
gaagaatgaagaaggagtgtgttgtatttatagtatgttaaagcgttgacaatgtaatgagccaattgagttctcaaaggttggatagaaagatttaaag |
21386500 |
T |
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| Q |
101 |
taattaatcttgattaattaacataatttaatccacttagctgcatctgactaa |
154 |
Q |
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|||||||||||||||||||||||||| |||||||||| || |||||||||||| |
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| T |
21386501 |
taattaatcttgattaattaacataagataatccacttcgccgcatctgactaa |
21386554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 270
Target Start/End: Complemental strand, 33025748 - 33025715
Alignment:
| Q |
237 |
ttgaaattgctcatgataagggttggtttaacct |
270 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
33025748 |
ttgaaattgctcatgataagggttggtttaacct |
33025715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 21371050 - 21371018
Alignment:
| Q |
164 |
atcttgactaattaacataagttaatccactta |
196 |
Q |
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||||||| ||||||||||||||||||||||||| |
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| T |
21371050 |
atcttgattaattaacataagttaatccactta |
21371018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 195 - 417
Target Start/End: Original strand, 23901027 - 23901246
Alignment:
| Q |
195 |
taagaatgtaatataactaattgaaatggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
294 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23901027 |
taagaatgtaatataactaattgaaacggctcattttatccgttgaaattgctcatgataagggttggtttaacctctagctggaatgtgattttatgct |
23901126 |
T |
|
| Q |
295 |
tgttgatcaagtcgatcttctcatatttttcaataa-cggtgctgataaacttgtgaatcatggacacttgattatgggtgcttgatggtcgaattcttt |
393 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
23901127 |
tgttgatcaag----tcttctcatatttttcaataattggtgctgataaacttgcgaatcatggacactcgattctgggtgcttgatggtcgaattcttt |
23901222 |
T |
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| Q |
394 |
atttgagtttatttgggaaccttt |
417 |
Q |
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|||||||||||||||||||||||| |
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| T |
23901223 |
atttgagtttatttgggaaccttt |
23901246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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