View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12989_low_1 (Length: 444)
Name: NF12989_low_1
Description: NF12989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12989_low_1 |
 | |
|
| [»] chr2 (1 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 444
Target Start/End: Complemental strand, 40952809 - 40952394
Alignment:
| Q |
18 |
gctagtatatgcttctttcctaacctaaccccttacctttcaaagttcaaacttcaatgatgat-atatggaagtgagttggaaagcaagaaaaccaaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
40952809 |
gctagtatatgcttctttcctaacctaaccccttacctttcaaagttcaaacttcaatgatgattatatggaagtgagttggaaagcaagaaaaccaaca |
40952710 |
T |
|
| Q |
117 |
aaatgnnnnnnnnttgtgtaggcctacttaacttaatactaatacatgatgaccacaaattatcaacaattttaattcaataataagtgtataattttct |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40952709 |
aaatgaaaaaaaattgtgtaggcctacttaacttaatactaatacatgatgaccacaaattatcaacaattttaattcaataataagtgtataattttct |
40952610 |
T |
|
| Q |
217 |
tataaggaagagtggaaattgagatttgacgttttcctaattggcttattaatgtggcagctagtgataaaaggagtggaagtaagtggttccttactga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
40952609 |
tataaggaagagtggaaattgagatttgacgttttcctaattggcttattaatgtggcagctagtgataaaaggagtggaagtaagtggttccttactca |
40952510 |
T |
|
| Q |
317 |
aatatcaaccattcacaaatctttcacaatggaagaaacnnnnnnnnnttagttgagtcaaaagtataatgatgataattttctaatatttaaaataaaa |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40952509 |
aatatcaaccattc-----------acaatggaagaaac-aaaaaaaattagttgactcaaaagtataatgatgataattttctaatatttaaaataaaa |
40952422 |
T |
|
| Q |
417 |
catccttaaatttgttggtatatcaagt |
444 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
40952421 |
catccttaaatttgttggtatatcaagt |
40952394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University