View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12989_low_2 (Length: 342)
Name: NF12989_low_2
Description: NF12989
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12989_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 31 - 327
Target Start/End: Complemental strand, 13467764 - 13467468
Alignment:
| Q |
31 |
gaaacattatttaagttacaatcaattctaattgaaaactcccaatcttacaaaaattaatctcaagtcttcagaatcacttttgggagccaaaagtgaa |
130 |
Q |
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| T |
13467764 |
gaaacattatttaagttacaatcgattctaattgaaaactcccaatcttacaaaaattaatctcaagtcttcagaatcacttttgggagccaaaagtgaa |
13467665 |
T |
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| Q |
131 |
tctaaacaagcatttatttaaaattttatttcgtctcgtcatgtatgtaaattttttactttaaaggtttcgcgtgccggagggttgtgatttggttgct |
230 |
Q |
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| T |
13467664 |
tctaagcaagcatttatttaaaatattatttcgtctcgtcgtgtatgtaaattttttactttaaaggtttcgcgtgccggagggttgtgatttggttgct |
13467565 |
T |
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| Q |
231 |
gctggagcactggctgtggcgtttgacacttcacatgttgcacttgttcatacatagagctcagttgaaatctggtcaggtatgatctagtgttgtt |
327 |
Q |
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| T |
13467564 |
gctggagcactggctgtggcatttgacacttcacatgttgcacttgttcatacatagagctcagttgaaatctggtcaggtatgatctagtgttgtt |
13467468 |
T |
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Target: chr3 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 50 - 327
Target Start/End: Complemental strand, 42783507 - 42783240
Alignment:
| Q |
50 |
aatcaattctaattgaaaactcccaatcttacaaaaattaatctcaagtcttcagaatcacttttgggagccaaaagtgaatctaaacaagcatttattt |
149 |
Q |
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| T |
42783507 |
aatcaattctgattgtgaactcccaaacataaaaaaatcaatcttaa-tctttagaatcacttttgggagctaaaagttaatccaagaaagcatttt--- |
42783412 |
T |
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| Q |
150 |
aaaattttatttcgtctcgtcatgtatgtaaa-ttttttactttaaaggtttcgcgtgccggagggttgtgatttggttgctgctggagcactggctgtg |
248 |
Q |
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| T |
42783411 |
---atttcatcgcatcacatcatgtttgtaatgttttttaatttgaaggtttcgcgtaccggagggctgtgatttggttgctgctggagcacttgctgtg |
42783315 |
T |
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| Q |
249 |
gcgtttgacacttcacatgttgcacttgttcatacatagagctcagttgaaatctggtcaggtatgatctagtgttgtt |
327 |
Q |
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| T |
42783314 |
gcatttggcacttcacatgttggacttgtt----catagagctcagttgaaatctggtcaggtatgatctagtgttgtt |
42783240 |
T |
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