View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298_low_1 (Length: 706)
Name: NF1298_low_1
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298_low_1 |
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| [»] chr5 (5 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 675; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 675; E-Value: 0
Query Start/End: Original strand, 16 - 706
Target Start/End: Original strand, 38815986 - 38816676
Alignment:
| Q |
16 |
atgaaggtgttggaagcgacaatgagggaaaacctaaatgccgcaattaaggtggttagaggcagaccacaattaaagtagaatttcccaacaacagtaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38815986 |
atgaaggtgttggaagcgacaatgagggaaaacccaaatgccgcaattaaggtggttagaggcagtccacaattaaagtagaatttcccaacaacagtaa |
38816085 |
T |
|
| Q |
116 |
aattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816086 |
aattaattttaaaaattacacttctataactaggtttacatttctatcttatccaattcccttcacagaatcacatgcacaattatcataactcagtgaa |
38816185 |
T |
|
| Q |
216 |
agaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaacagacaaag |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816186 |
agaaaatgcaagaaaaggtatattgtatcctttgaacctcaatttctcacctacccaaagaaacctcatacaactatatacccttctctaacagacaaag |
38816285 |
T |
|
| Q |
316 |
tcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816286 |
tcagtttaatttacataaggccgtgatgtataccaactgtaaccacaaaaagtagccaactgcaaaatctagacaaaatgtaaaaccctaagaacaaggt |
38816385 |
T |
|
| Q |
416 |
ttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaa |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816386 |
ttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaattgaatgttccacagcaa |
38816485 |
T |
|
| Q |
516 |
gatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcatat |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38816486 |
gatcactcaaatcttcacctgaacacacaacaagaaagccttagaaagaaacttcacaaataaatatctcccataaatatctagcaccgagacttcatat |
38816585 |
T |
|
| Q |
616 |
taaaggtgtgtccagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaagcacggacactcctcgaatta |
706 |
Q |
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| T |
38816586 |
taaaggtgtgtgcagtgtccaacagatgtcagtctccaacactatcacgattcacgaatataactatgaatcacggacactcctcgaatta |
38816676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 398 - 547
Target Start/End: Original strand, 38821782 - 38821928
Alignment:
| Q |
398 |
aaaccctaagaacaaggtttaattaaacctaaacaacagcataccatttgtccctttctcacccacccaagcattcctccttcatctttagaagggcaaa |
497 |
Q |
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|||||||||||||||| ||||| ||| ||||||| || ||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| | |
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| T |
38821782 |
aaaccctaagaacaagatttaagcaaatctaaacatca---taccatttgtccctttctcacccacccaagccttcctccttcttctttagatgggcaca |
38821878 |
T |
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| Q |
498 |
ttgaatgttccacagcaagatcactcaaatcttcacctgaacacacaaca |
547 |
Q |
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|||| |||||||||||||| |||||||||||||||| |||||||||| |
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| T |
38821879 |
ccgaatagtccacagcaagatcgctcaaatcttcacctggacacacaaca |
38821928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 618 - 656
Target Start/End: Original strand, 35665559 - 35665597
Alignment:
| Q |
618 |
aaggtgtgtccagtgtccaacagatgtcagtctccaaca |
656 |
Q |
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|||||||||||||||||||||| |||||||| ||||||| |
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| T |
35665559 |
aaggtgtgtccagtgtccaacacatgtcagtttccaaca |
35665597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 706
Target Start/End: Original strand, 24906250 - 24906279
Alignment:
| Q |
677 |
aactatgaagcacggacactcctcgaatta |
706 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
24906250 |
aactatgaagcacggacactcctcgaatta |
24906279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 38821542 - 38821591
Alignment:
| Q |
112 |
gtaaaattaattttaaaaattacacttctataactaggtttacatttcta |
161 |
Q |
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||||||||||||||||||| ||||||||||||||||| || ||||||| |
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| T |
38821542 |
gtaaaattaattttaaaaaaggcacttctataactaggtctatatttcta |
38821591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 706
Target Start/End: Original strand, 34073276 - 34073305
Alignment:
| Q |
677 |
aactatgaagcacggacactcctcgaatta |
706 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
34073276 |
aactatgaagcacggacactcctcgaatta |
34073305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 677 - 706
Target Start/End: Original strand, 5440965 - 5440994
Alignment:
| Q |
677 |
aactatgaagcacggacactcctcgaatta |
706 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
5440965 |
aactatgaagcacggacactcctcgaatta |
5440994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 678 - 706
Target Start/End: Complemental strand, 17852120 - 17852092
Alignment:
| Q |
678 |
actatgaagcacggacactcctcgaatta |
706 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17852120 |
actatgaagcacggacactcctcgaatta |
17852092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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