View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298_low_2 (Length: 523)
Name: NF1298_low_2
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 35850764 - 35850402
Alignment:
| Q |
1 |
tgtggcattagaattgccgccaccgttagagttgccgccgtcttctggaactattggtgtgccagagaagtatgtttcgtacttgttttcggtatatgga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850764 |
tgtggcattagaattgccgccaccgttagagttgccgccgtcttctggaactattggtgtgccagagaagtatgtttcgtacttgttttcggtatatgga |
35850665 |
T |
|
| Q |
101 |
ttcttacgctcgttcagtattcgattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatg |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850664 |
ttcttacgctcgttcagtattcaattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatg |
35850565 |
T |
|
| Q |
201 |
ctgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgccttaggtattatgcttc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35850564 |
ctgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgcctaaggtattatgcttc |
35850465 |
T |
|
| Q |
301 |
tacctacttaggttaattttttatttatatactgttgactgttttgtttgcattagagctttg |
363 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35850464 |
tacctacttaggttaattttttatttatatactgttgactgttttgtttgcattagagctttg |
35850402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 2 - 360
Target Start/End: Complemental strand, 35841146 - 35840791
Alignment:
| Q |
2 |
gtggcattagaattgccgccaccgttagagttgccgccgtcttctggaactattggtgtgccagagaagtatgtttcgtacttgttttcggtatatggat |
101 |
Q |
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||||||| ||||||| |||| || || ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35841146 |
gtggcatcagaattgtcgccgcctttggagttaccgccgtcttcaggaactattggtgtgccggagaagtatgtttcgtacttgttttcggtatatggat |
35841047 |
T |
|
| Q |
102 |
tcttacgctcgttcagtattcgattgtttctttatccgtttagtttggatgatttcgtcggtgcccttaactgtcgggttcctaatacgctgcttgatgc |
201 |
Q |
| |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |||||| || ||||||| |
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| T |
35841046 |
tcttacgatcattcagtattcgattgtttctttatccgtttagtttggatgatttcgtcggggctcttaactgtcgagttccaaatacgttggttgatgc |
35840947 |
T |
|
| Q |
202 |
tgttcataattctttaatgcgtgctttgagacgtcatcttgaacatcttgcatttgagggatcgaagattgcatcgagatgccttaggtattatgcttct |
301 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| | | ||||||| |||||||||||||||||||||| |
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| T |
35840946 |
tgttcataattctttaatgcgtgctctgagacgtcatcttgaacatcttgcatctgagggatcaacggttgcatctcaatgccttaggtattatgcttct |
35840847 |
T |
|
| Q |
302 |
acctacttaggttaattttttatttatatactgttgactgttttgtttgcattagagct |
360 |
Q |
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||| || |||||||||| | || |||| ||||||||||||||| | |||||||||| |
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|
| T |
35840846 |
tcctcctcaggttaatttatgat---tatattgttgactgttttgtgtacattagagct |
35840791 |
T |
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