View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1298_low_3 (Length: 502)

Name: NF1298_low_3
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1298_low_3
NF1298_low_3
[»] chr1 (2 HSPs)
chr1 (102-502)||(36979648-36980042)
chr1 (188-253)||(28108178-28108244)
[»] chr7 (3 HSPs)
chr7 (187-281)||(2729785-2729879)
chr7 (216-266)||(5897602-5897652)
chr7 (191-245)||(28443765-28443819)
[»] chr3 (3 HSPs)
chr3 (217-277)||(39028189-39028249)
chr3 (205-243)||(51381055-51381093)
chr3 (205-281)||(54525003-54525079)
[»] chr6 (4 HSPs)
chr6 (188-277)||(33900099-33900188)
chr6 (202-277)||(27177029-27177104)
chr6 (205-277)||(10498119-10498191)
chr6 (189-245)||(33629460-33629516)
[»] chr2 (8 HSPs)
chr2 (188-265)||(29699507-29699584)
chr2 (187-281)||(27249739-27249833)
chr2 (199-245)||(5357560-5357606)
chr2 (191-252)||(3848151-3848212)
chr2 (216-281)||(29923870-29923935)
chr2 (205-281)||(11915387-11915463)
chr2 (187-243)||(25271846-25271902)
chr2 (222-281)||(12037358-12037417)
[»] chr8 (4 HSPs)
chr8 (217-281)||(31645172-31645236)
chr8 (187-245)||(5920766-5920824)
chr8 (205-281)||(42456844-42456920)
chr8 (205-245)||(41581146-41581186)
[»] chr4 (5 HSPs)
chr4 (218-281)||(45073262-45073325)
chr4 (188-281)||(9672177-9672270)
chr4 (188-277)||(21512084-21512173)
chr4 (187-281)||(24699347-24699441)
chr4 (188-241)||(12868532-12868585)
[»] chr5 (1 HSPs)
chr5 (205-277)||(9379273-9379345)


Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 102 - 502
Target Start/End: Original strand, 36979648 - 36980042
Alignment:
Q  102 aaagcatttgggcaagttcatatcatttgcaactacattggtcccatatgagaattttaaacatagcctccgatgataaggcctgtgaaaattgttattc 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| ||||||||||| |||    
T  36979648 aaagcatttgggcaagttcatatcatttgcaactacattggtcccatatgggaattttaaacatagcctcccatgacaaggcctatgaaaattgtttttc 36979747  T
Q  202 acgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccataaaattgcatgtcactttta 301  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979748 acgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgttaatcggcaattaattgccgccgattaaaatccataaaattgcatgtcactttta 36979847  T
Q  302 aatttgaaatggtcaatccaaagataaaagcatgctatggtatccacaaatgagagaatacttatgaaacaattacaatgtcaaaataaactctatcctt 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36979848 aatttgaaatggtcaatccaaagataaaagcatgctatggtatccacaaatgagagaatacttatgaaacaattacaatgtcaaaataaactctatcctt 36979947  T
Q  402 acattaaagtgtttcactcatataaaccagccaacaattacaaacacaaaaaagttacgacaacatgatagttacatcatttatatgcaaagtgggatcc 501  Q
    |||||||||||||||||||||||||||||||||      ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36979948 acattaaagtgtttcactcatataaaccagcca------acaaacacaaaaatgttacgacaacatgatagttacatcatttatatgcaaagtgggatcc 36980041  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 28108244 - 28108178
Alignment:
Q  188 gaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaa-gacgtaaatgatcatcgg 253  Q
    |||||||||| ||||| |||||||||| ||||||||| |||||||||| |||||||||| |||||||    
T  28108244 gaaaattgttgttcacacttctaacaaggctgaaacaaaccagaaaaaagacgtaaatgttcatcgg 28108178  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 2729785 - 2729879
Alignment:
Q  187 tgaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    ||||||||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||  |||||||| |||| |||| ||  |||||||||||    
T  2729785 tgaaaattgatattcacacttctaacaaggctgaaacacaacagaaaaagacgtaaatgtccatcggcagttaactgccaccagttaaaatccat 2729879  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 216 - 266
Target Start/End: Original strand, 5897602 - 5897652
Alignment:
Q  216 gctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccg 266  Q
    ||||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  5897602 gctgaaacacaccagaaaaagacgtaaatgcacatcagcaattaattgccg 5897652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 191 - 245
Target Start/End: Complemental strand, 28443819 - 28443765
Alignment:
Q  191 aattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatg 245  Q
    ||||||| ||||| |||| ||||| |||||||||||| |||||||||||||||||    
T  28443819 aattgttgttcacacttcaaacaaggctgaaacacactagaaaaagacgtaaatg 28443765  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 217 - 277
Target Start/End: Complemental strand, 39028249 - 39028189
Alignment:
Q  217 ctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaat 277  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||| |||||||    
T  39028249 ctgaaacacaccagaaaaagacgtaaatgttcatcggcagttaactgccgccggttaaaat 39028189  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 51381093 - 51381055
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaa 243  Q
    |||| ||||| ||||||||||||||||||||||||||||    
T  51381093 cttcaaacaaggctgaaacacaccagaaaaagacgtaaa 51381055  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 281
Target Start/End: Complemental strand, 54525079 - 54525003
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    ||||||| || ||||||||||||||||||||  ||||||||   || |||| |||| |||||||| ||||| |||||    
T  54525079 cttctaagaaggctgaaacacaccagaaaaaatcgtaaatgtctattggcagttaactgccgccggttaaattccat 54525003  T

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Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 277
Target Start/End: Original strand, 33900099 - 33900188
Alignment:
Q  188 gaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaat 277  Q
    |||||||||| || || |||| ||||| || ||||||||||||||||||||||||||| |||| || | |||| |||||||| |||||||    
T  33900099 gaaaattgttgtttacacttcaaacaatgccgaaacacaccagaaaaagacgtaaatgctcattggtagttaactgccgccggttaaaat 33900188  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 202 - 277
Target Start/End: Complemental strand, 27177104 - 27177029
Alignment:
Q  202 acgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaat 277  Q
    |||||||||||||   |||||||||  ||||||||||||||||| |||||| || |||| ||||||||||||||||    
T  27177104 acgcttctaacaagattgaaacacattagaaaaagacgtaaatgttcatcgacagttaactgccgccgattaaaat 27177029  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 205 - 277
Target Start/End: Original strand, 10498119 - 10498191
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaat 277  Q
    ||||||| |||| ||||||||| |||||||||||||||||| |||||| || |||| |||| ||| |||||||    
T  10498119 cttctaataaagttgaaacacatcagaaaaagacgtaaatgttcatcgacagttaactgccaccgtttaaaat 10498191  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 245
Target Start/End: Complemental strand, 33629516 - 33629460
Alignment:
Q  189 aaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatg 245  Q
    ||||||||| ||| | ||| |||||| ||||||||||| ||||||||||||||||||    
T  33629516 aaaattgttgttcgcacttttaacaaggctgaaacacatcagaaaaagacgtaaatg 33629460  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 29699507 - 29699584
Alignment:
Q  188 gaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgcc 265  Q
    |||||||| ||||||   ||||||||| ||||||||||||||||||||||||||||||  |||||||| |||| ||||    
T  29699507 gaaaattggtattcatatttctaacaaggctgaaacacaccagaaaaagacgtaaatgtccatcggcagttaactgcc 29699584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 27249739 - 27249833
Alignment:
Q  187 tgaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    ||||||||||| |  || |||| ||||| ||||||||||||| |||||||| |||||||  |||||||| |||| |||||||  |||||||||||    
T  27249739 tgaaaattgttgtatacacttcaaacaaggctgaaacacaccggaaaaagatgtaaatgtccatcggcagttaactgccgcctgttaaaatccat 27249833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 245
Target Start/End: Original strand, 5357560 - 5357606
Alignment:
Q  199 ttcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatg 245  Q
    ||||| |||||||||| |||||||||||| |||||||||||||||||    
T  5357560 ttcacacttctaacaaggctgaaacacactagaaaaagacgtaaatg 5357606  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 3848212 - 3848151
Alignment:
Q  191 aattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcg 252  Q
    ||||||||||||| ||| ||  |||||||||||||| ||||||||||| |||||| ||||||    
T  3848212 aattgttattcacacttttatgaaagctgaaacacatcagaaaaagacataaatgttcatcg 3848151  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 29923870 - 29923935
Alignment:
Q  216 gctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    ||||||||||| ||||||||||| |||||| | |||| || |||| |||||||| |||||||||||    
T  29923870 gctgaaacacaacagaaaaagacataaatgtttatcgacagttaactgccgccggttaaaatccat 29923935  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 11915387 - 11915463
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    ||||||||||  ||||||||||||||||||| | ||||||| |||||| || |||| | | |||| |||||||||||    
T  11915387 cttctaacaagactgaaacacaccagaaaaaaatgtaaatgttcatcgacagttaactactgccggttaaaatccat 11915463  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 25271902 - 25271846
Alignment:
Q  187 tgaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaa 243  Q
    ||||||||||| || || |||| ||||| ||||||||||| ||||||||||||||||    
T  25271902 tgaaaattgttgtttacacttcaaacaaggctgaaacacatcagaaaaagacgtaaa 25271846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 12037417 - 12037358
Alignment:
Q  222 acacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    |||||||||||||||||||||||| |||| |||| |||| | ||| || |||||||||||    
T  12037417 acacaccagaaaaagacgtaaatgttcattggcagttaactaccgtcggttaaaatccat 12037358  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 31645236 - 31645172
Alignment:
Q  217 ctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    |||||||||||||||||| || |||||||| |||||||| |||| ||||| || |||||||||||    
T  31645236 ctgaaacacaccagaaaatgaagtaaatgaccatcggcagttaactgccgtcggttaaaatccat 31645172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 245
Target Start/End: Original strand, 5920766 - 5920824
Alignment:
Q  187 tgaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatg 245  Q
    ||||||||||| ||||| |||||||||| ||| ||||||| |||||||| |||||||||    
T  5920766 tgaaaattgttgttcacacttctaacaaggctaaaacacagcagaaaaatacgtaaatg 5920824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 42456844 - 42456920
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    |||||||||| ||||||| ||| ||||||||||||||| ||  ||||| ||||||| | ||| || |||||||||||    
T  42456844 cttctaacaaggctgaaatacatcagaaaaagacgtaattgtccatcgacaattaactaccgtcggttaaaatccat 42456920  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 205 - 245
Target Start/End: Complemental strand, 41581186 - 41581146
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaatg 245  Q
    |||| ||||| |||||||||||| |||||||||||||||||    
T  41581186 cttcaaacaaggctgaaacacactagaaaaagacgtaaatg 41581146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 45073325 - 45073262
Alignment:
Q  218 tgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    |||||||||| ||||||||| |||||||  |||||||| |||| |||||||| |||||||||||    
T  45073325 tgaaacacactagaaaaagatgtaaatgtccatcggcagttaactgccgccggttaaaatccat 45073262  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 281
Target Start/End: Complemental strand, 9672270 - 9672177
Alignment:
Q  188 gaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    |||||||| | |||||  ||||||||| ||||||||||| |||||||||||| |||||  |||||| | |||| || || || |||||||||||    
T  9672270 gaaaattgatgttcacagttctaacaatgctgaaacacatcagaaaaagacgaaaatgcccatcggtagttaactgtcgtcggttaaaatccat 9672177  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 277
Target Start/End: Complemental strand, 21512173 - 21512084
Alignment:
Q  188 gaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaat 277  Q
    |||||||||| || || |||  ||||| | ||||||||||||||||||||||||||||  |||| ||| |||| ||| |||| |||||||    
T  21512173 gaaaattgttgttgacactttaaacaaggatgaaacacaccagaaaaagacgtaaatgtccatcagcagttaactgcagccggttaaaat 21512084  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 24699347 - 24699441
Alignment:
Q  187 tgaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaatccat 281  Q
    ||||||||||| || ||  ||| ||||  ||| ||||| ||||||||||||||||||||  ||||| || |||| |||||||  |||||||||||    
T  24699347 tgaaaattgttgtttacaattcaaacagggctaaaacataccagaaaaagacgtaaatgtccatcgccagttaactgccgccagttaaaatccat 24699441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 12868585 - 12868532
Alignment:
Q  188 gaaaattgttattcacgcttctaacaaagctgaaacacaccagaaaaagacgta 241  Q
    |||||||||| ||||  |||||||||||||| ||||||||||| |||| |||||    
T  12868585 gaaaattgttgttcatacttctaacaaagctaaaacacaccagtaaaacacgta 12868532  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 277
Target Start/End: Complemental strand, 9379345 - 9379273
Alignment:
Q  205 cttctaacaaagctgaaacacaccagaaaaagacgtaaatgatcatcggcaattaattgccgccgattaaaat 277  Q
    ||||||| || ||||||| ||||||||||||||| |||||  ||||||  |||||| |||||||| |||||||    
T  9379345 cttctaagaaggctgaaatacaccagaaaaagacataaattctcatcgataattaactgccgccggttaaaat 9379273  T

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