View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298_low_7 (Length: 278)
Name: NF1298_low_7
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 39602716 - 39602478
Alignment:
| Q |
13 |
tttagaacatgatttgaaggctgtctctgttatgtgtaggatattgtggtttaaaggctgattggctttagttggtatgcaaggatattcttg------- |
105 |
Q |
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| T |
39602716 |
tttagaacatgatttgaaggttgtctttgttatgt--aggatattgtgttttgaaggctgactgactttagttggtatgcaaggataataggatatcaca |
39602619 |
T |
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| Q |
106 |
-ctaggtgttcaatatcaatcacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagttta-tgtctaaacaaggata |
203 |
Q |
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|||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| |
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| T |
39602618 |
cctaggtattcaatatcaactacttg--tttaaggtttgattatttgagcatgaaatcatgttagtagaataacattagtttaatgtctaaacaaggata |
39602521 |
T |
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| Q |
204 |
agagtgattgtgaattctttacttcatttgcattcatctcact |
246 |
Q |
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| T |
39602520 |
tgagtgattgtgaattttttacttcctttgcattcatgtcact |
39602478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 13 - 246
Target Start/End: Complemental strand, 21826878 - 21826640
Alignment:
| Q |
13 |
tttagaacatgatttgaaggctgtctctgttatgtgtaggatattgtggtttaaaggctgattggctttagttggtatgcaaggatattcttg------- |
105 |
Q |
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|||||||||||||||||||| ||||| |||||||| ||||||||||| ||| |||||||| || |||||||||||||||||||||| | |
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| T |
21826878 |
tttagaacatgatttgaaggttgtctttgttatgt--aggatattgtgttttgaaggctgactgactttagttggtatgcaaggataataggatatcaca |
21826781 |
T |
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| Q |
106 |
-ctaggtgttcaatatcaatcacttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagttta-tgtctaaacaaggata |
203 |
Q |
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| T |
21826780 |
cctaggtattcaatatgaactactta--tttaaggtttggttatttgagcatgaaatcgtattagtagaataacattagtttaatgtctaaacaaggata |
21826683 |
T |
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| Q |
204 |
agagtgattgtgaattctttacttcatttgcattcatctcact |
246 |
Q |
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| T |
21826682 |
tgagtgattgtgaattttttacttactctgcattcatgtcact |
21826640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 240
Target Start/End: Complemental strand, 11198009 - 11197895
Alignment:
| Q |
126 |
acttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtttatgtctaaacaaggataagagtgattgtgaattctttac |
225 |
Q |
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||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||| | ||||| | |
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| T |
11198009 |
acttgcttttacgatttggttatttgagcatgaaaccatgttagtagaataacataagtctatgtctaaacaaggataagagtgattgtaagatctttgc |
11197910 |
T |
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| Q |
226 |
ttcatttgcattcat |
240 |
Q |
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||| ||||||||||| |
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| T |
11197909 |
ttcttttgcattcat |
11197895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 9010472 - 9010531
Alignment:
| Q |
126 |
acttgcttttaaggtttggttatttgagcatgaaatcatgttcttagaataacataagtt |
185 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
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| T |
9010472 |
acttgcttttaaggtttggttatttgagcatgcaatcatgttattggaataacataagtt |
9010531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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