View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298_low_8 (Length: 268)
Name: NF1298_low_8
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 9789426 - 9789547
Alignment:
| Q |
30 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
9789426 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacaaaaaaagaaaacagaagtgcatagaatat |
9789525 |
T |
|
| Q |
130 |
taatttgataacatgattcaac |
151 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
9789526 |
taatttgataacatgattcaac |
9789547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 3587039 - 3586918
Alignment:
| Q |
30 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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|
| T |
3587039 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacaaaaaaagaaaacaaaagtgcatagaatac |
3586940 |
T |
|
| Q |
130 |
taatttgataacatgattcaac |
151 |
Q |
| |
|
| |||||||||||||||||||| |
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|
| T |
3586939 |
tgatttgataacatgattcaac |
3586918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 9789578 - 9789639
Alignment:
| Q |
182 |
aatagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcaacagctagg |
243 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
9789578 |
aatagatgcagtgaaaaatagtacctgtagatctgaaaagtctgacaacagcagcagctagg |
9789639 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 3586887 - 3586826
Alignment:
| Q |
182 |
aatagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcaacagctagg |
243 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
3586887 |
aatagatgcggtaaaaaatagtacctgcagatctgaaaagtctgacaacagcagcagctagg |
3586826 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 10014212 - 10014333
Alignment:
| Q |
30 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
10014212 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataataaagtatgatattgattgaataacaaacaaaaaaagaaaacagaagtacatagaatac |
10014311 |
T |
|
| Q |
130 |
taatttgataacatgattcaac |
151 |
Q |
| |
|
| |||||||||||||||||||| |
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|
| T |
10014312 |
tgatttgataacatgattcaac |
10014333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 10021353 - 10021474
Alignment:
| Q |
30 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatac |
129 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
10021353 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataataaagtatgatattgattgaataacaaacaaaaaaagaaaacagaagtacatagaatac |
10021452 |
T |
|
| Q |
130 |
taatttgataacatgattcaac |
151 |
Q |
| |
|
| |||||||||||||||||||| |
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|
| T |
10021453 |
tgatttgataacatgattcaac |
10021474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 31678753 - 31678650
Alignment:
| Q |
47 |
caacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgc--atagaatactaatttgataacatg |
144 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
31678753 |
caacttgcaatcacaaaagcataaaaa-gtatggtattgattgaataacaaa--aaaaaaaaaaacagaagtgcatatagaatactgatttgataacatg |
31678657 |
T |
|
| Q |
145 |
attcaac |
151 |
Q |
| |
|
||||||| |
|
|
| T |
31678656 |
attcaac |
31678650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 31678619 - 31678558
Alignment:
| Q |
182 |
aatagatgcagtgaaaaatagtacctgcagatctgaaaagtctgacaacagcaacagctagg |
243 |
Q |
| |
|
||||||||| ||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
31678619 |
aatagatgcggtgaaaaatcgtacctgtagatctgaaaagtctgacaacagcagcagctagg |
31678558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 30 - 151
Target Start/End: Complemental strand, 44504887 - 44504766
Alignment:
| Q |
30 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggtattgattgaataacaaacnnnnnnngaaaacagaagtgcatagaatac |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||||||||||| |
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|
| T |
44504887 |
atgaataaaggaacatgcaacttgcaatcacaaaagcataaaaaagtatggttttaattgaataacaaacaaaaaaagaaaaccgaagtgcatagaatac |
44504788 |
T |
|
| Q |
130 |
taatttgataacatgattcaac |
151 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
44504787 |
cgatttgataacatgattcaac |
44504766 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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