View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1298_low_9 (Length: 251)
Name: NF1298_low_9
Description: NF1298
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1298_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 2 - 243
Target Start/End: Original strand, 31793060 - 31793299
Alignment:
| Q |
2 |
agatgaaagagaactagtcaaaaacaagtaattcaaaaaataatatgtcttggagatacgagtcgaacatttgatagagtggtaaatagatcattttcta |
101 |
Q |
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| T |
31793060 |
agatgaaagagaactagtcaaaaacaagtaattcaaaaaataatatgtcttggagatacgagtcgaacatttgatagagtagtaaatagatcattttcta |
31793159 |
T |
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| Q |
102 |
tatacaaaagttttctttttagattgttaaaaatcaacatcctaaacacacttatttgtgatcaaccaaaatgaagaacttattcaacatgtatattttc |
201 |
Q |
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| T |
31793160 |
ta--caaaagttttctttttagattgttaaaaatcaacatcctaaacacacttatttgtgatcaaccaaaatgaagaacttattcaacatgtatattttc |
31793257 |
T |
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| Q |
202 |
aagaaacaccaacaatcatattccactacaaagagtataatc |
243 |
Q |
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| T |
31793258 |
aaaaaacaccaacaatcatactccactacaaaaagtataatc |
31793299 |
T |
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Back To:
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 178 - 218
Target Start/End: Original strand, 47509118 - 47509158
Alignment:
| Q |
178 |
aacttattcaacatgtatattttcaagaaacaccaacaatc |
218 |
Q |
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| T |
47509118 |
aactttttcaacatgtatattttcaaccaacaccaacaatc |
47509158 |
T |
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