View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_high_11 (Length: 318)
Name: NF12990_high_11
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_high_11 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 147 - 318
Target Start/End: Original strand, 1419119 - 1419290
Alignment:
| Q |
147 |
ttaatgactcatcttggatcatcacatactacgctgcttctcattttactttgctgattgttttgtttgatatgaattgatgatatttacttactgcttc |
246 |
Q |
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| T |
1419119 |
ttaatgactcatcttggatcatcacatactacgctgcttctcattttactttgctgattgttttgtttgatatgaattgatgatatttacttacttcttc |
1419218 |
T |
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| Q |
247 |
tacnnnnnnngaccaaattcaagctgttccatatattttcgttactaccaaattatactacttaagttaaat |
318 |
Q |
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| T |
1419219 |
tacaaaaaaagaccaaattcaagctgttccatatattttcgttactaccaaattatactacttaagttaaat |
1419290 |
T |
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Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 1418929 - 1419006
Alignment:
| Q |
9 |
gacatcatctgactgactatattcatcac-accactccaaccaaggatggtcatgtattttctctaatatccctaaca |
85 |
Q |
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| T |
1418929 |
gacaccatatgactgactatattcatcaccaccactccaaccaaggatggtcatgtattttttctaatatccctaaca |
1419006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 101 - 158
Target Start/End: Original strand, 1419052 - 1419106
Alignment:
| Q |
101 |
tctttctttcaaatttctcgtttcttataatgaatctttttagaaattaatgactcat |
158 |
Q |
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| T |
1419052 |
tctttctttcaaa---ctcgtttcttataatgaatctttttagaaattaatgactcat |
1419106 |
T |
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