View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_low_10 (Length: 349)
Name: NF12990_low_10
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 20079909 - 20080045
Alignment:
| Q |
1 |
tgtggatgactattctcgctatacatggactttgtttatttctcataaaaatgacgcttttgttgcctttcggaaacttgctaaaattattcaaaatgaa |
100 |
Q |
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| T |
20079909 |
tgtggatgactattcactctatacatggactttgtttatttctcataaaaacgacgattttgttgccttt-gaaaacttgctaaaattattcaaaatgaa |
20080007 |
T |
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| Q |
101 |
aaagatttaaaaattgcatctatccgaagtgatcatgg |
138 |
Q |
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| T |
20080008 |
aacgatttaaaaattgcatctatccaaagtgatcatgg |
20080045 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 22834612 - 22834654
Alignment:
| Q |
210 |
caagaactccacaacaaaatggggtagtggaaaggaaaaatag |
252 |
Q |
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| T |
22834612 |
caagaactccacaacaaaatggagttgttgaaaggaaaaatag |
22834654 |
T |
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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 29563207 - 29563248
Alignment:
| Q |
211 |
aagaactccacaacaaaatggggtagtggaaaggaaaaatag |
252 |
Q |
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| T |
29563207 |
aagaactccacaacaaaatggagttgttgaaaggaaaaatag |
29563248 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 20578249 - 20578209
Alignment:
| Q |
212 |
agaactccacaacaaaatggggtagtggaaaggaaaaatag |
252 |
Q |
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| T |
20578249 |
agaactccacaacaaaatggtgttgttgaaaggaaaaatag |
20578209 |
T |
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