View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12990_low_12 (Length: 314)

Name: NF12990_low_12
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12990_low_12
NF12990_low_12
[»] chr1 (2 HSPs)
chr1 (205-313)||(29585475-29585584)
chr1 (98-159)||(9516629-9516691)
[»] chr5 (3 HSPs)
chr5 (95-150)||(13515991-13516046)
chr5 (98-159)||(32020052-32020114)
chr5 (105-153)||(15241025-15241074)
[»] chr2 (2 HSPs)
chr2 (98-159)||(36731228-36731290)
chr2 (90-149)||(9450315-9450375)
[»] chr8 (1 HSPs)
chr8 (105-159)||(29642651-29642705)
[»] chr7 (3 HSPs)
chr7 (98-159)||(19868162-19868224)
chr7 (100-150)||(32117872-32117922)
chr7 (98-152)||(2276730-2276785)
[»] chr4 (4 HSPs)
chr4 (100-150)||(27756619-27756669)
chr4 (98-159)||(9326935-9326999)
chr4 (98-159)||(9373657-9373721)
chr4 (98-159)||(9381969-9382033)
[»] chr6 (1 HSPs)
chr6 (95-159)||(31790981-31791045)


Alignment Details
Target: chr1 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 205 - 313
Target Start/End: Complemental strand, 29585584 - 29585475
Alignment:
Q  205 acaaacccatcaaaatatat-aagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttactttccaactccaccacc 303  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29585584 acaaacccatcaaaatatatcaagtgttaaatgaatttagaaaaataaagtagctataattgtgtaaaaaagaggatttttacttttcaactccaccacc 29585485  T
Q  304 tacatacata 313  Q
    ||||||||||    
T  29585484 tacatacata 29585475  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 9516691 - 9516629
Alignment:
Q  98 tgtattctatattaaatagataattttttgataa-taattgatgtttttcaatgaaaaattac 159  Q
    |||||| ||||||||||| |||| ||||| |||| |||||| |||||||||||||||| ||||    
T  9516691 tgtattttatattaaatatataactttttaataaataattggtgtttttcaatgaaaagttac 9516629  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 13515991 - 13516046
Alignment:
Q  95 ttatgtattctatattaaatagataattttttgataataattgatgtttttcaatg 150  Q
    |||| ||||||||||||||||||||||||||| |||||||||||| |||| |||||    
T  13515991 ttatatattctatattaaatagataattttttaataataattgatattttccaatg 13516046  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 32020052 - 32020114
Alignment:
Q  98 tgtattctatattaaatagataa-ttttttgataataattgatgtttttcaatgaaaaattac 159  Q
    ||||||||||||||||||||||| |||||| |||||||| | |||||||||| ||||| ||||    
T  32020052 tgtattctatattaaatagataacttttttaataataatcggtgtttttcaaagaaaagttac 32020114  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 15241025 - 15241074
Alignment:
Q  105 tatattaaatagataattttttgataa-taattgatgtttttcaatgaaa 153  Q
    ||||||||||| |||||||||| |||| |||||| |||||||||||||||    
T  15241025 tatattaaatatataattttttaataaataattgttgtttttcaatgaaa 15241074  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 36731290 - 36731228
Alignment:
Q  98 tgtattctatattaaatagataatt-ttttgataataattgatgtttttcaatgaaaaattac 159  Q
    ||||||||||||||||||||||||| |||| |||||||||  |||||||||||||||| ||||    
T  36731290 tgtattctatattaaatagataatttttttaataataattagtgtttttcaatgaaaagttac 36731228  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 9450375 - 9450315
Alignment:
Q  90 ggaatttatgtattctatattaaatagataattttttgataa-taattgatgtttttcaat 149  Q
    ||||||| |||||| | ||||||||| |||||||||| |||| |||||| |||||||||||    
T  9450375 ggaatttgtgtattttctattaaatatataattttttaataaataattgttgtttttcaat 9450315  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 159
Target Start/End: Complemental strand, 29642705 - 29642651
Alignment:
Q  105 tatattaaatagataattttttgataataattgatgtttttcaatgaaaaattac 159  Q
    ||||||||||||| || ||||| |||||||||| |||||||||||||||| ||||    
T  29642705 tatattaaatagacaactttttaataataattggtgtttttcaatgaaaagttac 29642651  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 19868224 - 19868162
Alignment:
Q  98 tgtattctatattaaatagataattttttgataa-taattgatgtttttcaatgaaaaattac 159  Q
    |||||| ||||||||||| |||| |||||||||| |||||| |||||||||||||||| ||||    
T  19868224 tgtattttatattaaatatataactttttgataaataattggtgtttttcaatgaaaatttac 19868162  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 32117922 - 32117872
Alignment:
Q  100 tattctatattaaatagataattttttgataataattgatgtttttcaatg 150  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  32117922 tattctatattaaatagataactttttaataataattggtgttttccaatg 32117872  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 98 - 152
Target Start/End: Complemental strand, 2276785 - 2276730
Alignment:
Q  98 tgtattctatattaaatagataattttttgat-aataattgatgtttttcaatgaa 152  Q
    |||||| |||||||||||||||| ||||| || |||||||| ||||||||||||||    
T  2276785 tgtattttatattaaatagataactttttaataaataattggtgtttttcaatgaa 2276730  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 27756669 - 27756619
Alignment:
Q  100 tattctatattaaatagataattttttgataataattgatgtttttcaatg 150  Q
    ||||||||||||||||||||| ||||| |||||||||| |||||| |||||    
T  27756669 tattctatattaaatagataactttttaataataattggtgttttccaatg 27756619  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 9326935 - 9326999
Alignment:
Q  98 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 159  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9326935 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9326999  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 9373657 - 9373721
Alignment:
Q  98 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 159  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9373657 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9373721  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 159
Target Start/End: Original strand, 9381969 - 9382033
Alignment:
Q  98 tgtattctatattaaatagataattttttgataataattga---tgtttttcaatgaaaaattac 159  Q
    |||||||||||||||||||| || ||||| |||||||||||   | |||||||||||||| ||||    
T  9381969 tgtattctatattaaatagacaactttttaataataattgatactatttttcaatgaaaagttac 9382033  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 159
Target Start/End: Original strand, 31790981 - 31791045
Alignment:
Q  95 ttatgtattctatattaaatagataattttttgataataattgatgtttttcaatgaaaaattac 159  Q
    ||||||||||||||||||||||  ||  |||| |||||||||  ||||||||||| |||| ||||    
T  31790981 ttatgtattctatattaaataggaaacgttttaataataattagtgtttttcaataaaaagttac 31791045  T

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