View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_low_13 (Length: 298)
Name: NF12990_low_13
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 220
Target Start/End: Complemental strand, 2140203 - 2140002
Alignment:
| Q |
19 |
gaacacaatgattcatgctaattgaaaaataattgtacaaaaacaggactattaatgtcacacaaataaagtacctattcttcaagctgtttaccaacat |
118 |
Q |
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| T |
2140203 |
gaacacaatgattcatgctaattgaaaaataattgtacaaaaacaggactattaatgtcacacaaataaagtacctattctccaagctgtttaccaacat |
2140104 |
T |
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| Q |
119 |
gagtacattagtacttaaggtatctccaatnnnnnnnnnnnnnnnnnntgcattttgcacagcaacataaaacagctcccacttagaccccacgcaccat |
218 |
Q |
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| T |
2140103 |
gagtacattagtacttaaggtatctccaatatcatcatcatcatcatctgcattttgcacagcaacataaaacagcttccacttagaccccacgcaccat |
2140004 |
T |
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| Q |
219 |
tt |
220 |
Q |
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|| |
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| T |
2140003 |
tt |
2140002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 298
Target Start/End: Complemental strand, 2139964 - 2139928
Alignment:
| Q |
262 |
tattgtgcctatttcgaacttccaaaatctcccttcc |
298 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2139964 |
tattgtgcctatttcgaacttccaaaatctcccttcc |
2139928 |
T |
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