View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_low_15 (Length: 256)
Name: NF12990_low_15
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 55714365 - 55714125
Alignment:
| Q |
1 |
tatcataaaggagctagctttgaataataaattccccgcatgtgtatgttcactcaatagaagaagacaattctcatcatatcatataggtatagatatg |
100 |
Q |
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| T |
55714365 |
tatcataaaggagttagctttgaataataaattccccgcgtgtgtatgttcactcaatagaagaagacaattctcatcatatcatataggtatagatatg |
55714266 |
T |
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| Q |
101 |
tagatataaacatcatgccaccctcttgtgacattatgttatatatactataagctcttctaattaaactagaaaggccttgtgacacgaccacatgtcc |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |
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| T |
55714265 |
tagatataaacattatgccaccctcttgtgacattatgttatatatactataagctattctaattaaactagaaaggccttgtgacacgaccacgtgccc |
55714166 |
T |
|
| Q |
201 |
taccacaaagaggagtattctatgcgactggatattcatct |
241 |
Q |
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||||||||||||||| ||||||||||||||||||||||||| |
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| T |
55714165 |
taccacaaagaggagcattctatgcgactggatattcatct |
55714125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 101 - 244
Target Start/End: Complemental strand, 55297554 - 55297407
Alignment:
| Q |
101 |
tagatataaacatcatgccaccctcttgtgacattatgttatatata----ctataagctcttctaattaaactagaaaggccttgtgacacgaccacat |
196 |
Q |
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||||||||||||| |||||||||||| ||||||| |||||||||||| |||||| || | ||||||||||||||||||||||||||||||||||| | |
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| T |
55297554 |
tagatataaacattatgccaccctctcgtgacatcatgttatatatatatactataaactatcctaattaaactagaaaggccttgtgacacgaccactt |
55297455 |
T |
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| Q |
197 |
gtcctaccacaaagaggagtattctatgcgactggatattcatctctc |
244 |
Q |
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| ||| ||||||||| ||| ||||| || ||||||||||||||||||| |
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| T |
55297454 |
gccctgccacaaagaagagcattctttgggactggatattcatctctc |
55297407 |
T |
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