View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_low_16 (Length: 237)
Name: NF12990_low_16
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 31185641 - 31185861
Alignment:
| Q |
1 |
catcttccattaatcctccttcgcatccttggtcttcaccttttgtgtcacaatctactagctcttgttctgagagggagactaatttgcctgtagttat |
100 |
Q |
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| T |
31185641 |
catcttccattaatcctccttcgcatccttggtcttcaccttttgtgtcacaatctactagctcttgttctgagagggagactagtttgcctgtagttat |
31185740 |
T |
|
| Q |
101 |
ttggttgataccctcggttgcagccaccgttgaaaatgcccagcagctcccttttgtttcattttcaaaacaaaatcaacagaaagattatttatttaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31185741 |
ttggttgataccctcggttgcagccaccgttgaaaatgcccagcagctcccttttgtttcattttcaaaacaaaatcaacagaaagattatttatttaat |
31185840 |
T |
|
| Q |
201 |
ccaattgattaaactcaaatc |
221 |
Q |
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||||||||||||||||||||| |
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| T |
31185841 |
ccaattgattaaactcaaatc |
31185861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 31194468 - 31194673
Alignment:
| Q |
1 |
catcttccattaatcctccttcgcatccttggtcttcaccttttgtgtcacaatctactagctcttgttctgagagggagactaatttgcctgtagttat |
100 |
Q |
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|||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||| || ||| ||||||||||| |
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| T |
31194468 |
catcttccattaatcctccttcacatccttgatcttcaccttttgtgtcacaatcaactaactcttgttctgagagggagattagttttcctgtagttat |
31194567 |
T |
|
| Q |
101 |
ttggttgataccctcggttgcagccaccgttgaaaatgcccagcagctcccttttgtttcattttcaaaacaaaatcaacagaaagattatttatttaat |
200 |
Q |
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| T |
31194568 |
ttggttgataccctcgattgcagccactgttgaaaatgcccagcagctcccttttgttttattttcaagacaaaattaacagaaacattaattattcaat |
31194667 |
T |
|
| Q |
201 |
ccaatt |
206 |
Q |
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||||| |
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| T |
31194668 |
tcaatt |
31194673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 31176873 - 31176966
Alignment:
| Q |
49 |
cacaatctactagctcttgttctgagagggagactaatttgcctgtagttatttggttgataccctcggttgcagccaccgttgaaaatgccca |
142 |
Q |
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||||||||| || ||||||||||| || || |||| || ||||| |||||||||| ||||||||| | | |||||| |||||||||||||| |
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| T |
31176873 |
cacaatctatcagttcttgttctgatagtgacactagttcacctgttgttatttggtggataccctctatggaagccacagttgaaaatgccca |
31176966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 8899073 - 8899027
Alignment:
| Q |
27 |
ccttggtcttcaccttttgtgtcacaatctactagctcttgttctga |
73 |
Q |
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| T |
8899073 |
ccttggtctacaccttttgtgtcacaatcaacaagttcttgttctga |
8899027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 73
Target Start/End: Complemental strand, 31727231 - 31727185
Alignment:
| Q |
27 |
ccttggtcttcaccttttgtgtcacaatctactagctcttgttctga |
73 |
Q |
| |
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|||||||||||||| |||||||||||||| || || ||||||||||| |
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| T |
31727231 |
ccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctga |
31727185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 142
Target Start/End: Original strand, 35228537 - 35228630
Alignment:
| Q |
49 |
cacaatctactagctcttgttctgagagggagactaatttgcctgtagttatttggttgataccctcggttgcagccaccgttgaaaatgccca |
142 |
Q |
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||||||| ||||||||||| || ||||| || |||||| | ||||| |||||||| | ||||| || |||||||||| |||| ||||||||| |
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| T |
35228537 |
cacaatccactagctcttgctcagagagtgatactaatcttcctgtggttatttgatgaataccttctattgcagccacagttgcaaatgccca |
35228630 |
T |
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