View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12990_low_2 (Length: 750)

Name: NF12990_low_2
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12990_low_2
NF12990_low_2
[»] chr3 (1 HSPs)
chr3 (16-733)||(46943720-46944429)


Alignment Details
Target: chr3 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 16 - 733
Target Start/End: Original strand, 46943720 - 46944429
Alignment:
Q  16 aaaggcactcacctcccgaattccaacacaatggaaaagaatattgggttttacatatcctggcaaaagaacaaatgttccatttacgtgggtggaagct 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943720 aaaggcactcacctcccgaattccaacacaatggaaaagaatattgggttttacatatcctggcaaaagaacaaatgttccatttacgtgggtggaagct 46943819  T
Q  116 ttgcatcagaacgcaatatccttcaaaaagtagaagctgtgggcataacttgcaacattgttcagcttaaagatagaataactttgactgcaaaagaaca 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46943820 ttgcatcagaacgcaatatccttcaaaaagtagaagctgtgggcataacttgcaacattgttcagcttaaagatagaataactttgactgcaaaagaaca 46943919  T
Q  216 gagatatctaattaaattcactgatgtgtatgatttcaatgaaaaagaatgaaagnnnnnnngaagcatattgtgtgatacaaagtggaaggaagcaggc 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  46943920 gagatatctaattaaattcactgatgtgtatgatttcaatgaaaaagaatgaaagaaaaaaagaagcatattgtgtgatacaaagtggaaggaagcaggc 46944019  T
Q  316 atgttgttagagaaggctgccttatttagaccccacaaagagaaaacaagataaaagaaagaaagtaacaaacagctttatgggaagtgtggatgaggtt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46944020 atgttgttagagaaggctgccttatttagaccccacaaagagaaaacaagataaaagaaagaaagtaacaaacagctttatgggaagtgtggatgaggtt 46944119  T
Q  416 ctgtatcattgattttgaaatcaagtaaaattctcttttccttcttcatttttacaacaatattttgtttgtttacataatattaattacatgtacattt 515  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    |||||||||||||||||||||||||||||||||    
T  46944120 ctatatcattgattttgaaatcaagtaaaattctcttttccttcttcatttttaaaacaatat----tttgtttacataatattaattacatgtacattt 46944215  T
Q  516 tatatacaaacgtgtttgtttatgtatatgtgtgtaaatctttatacacacacataatagcaaaaagtcccttcttttcaaatttactgcaagttgttct 615  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |    
T  46944216 tatatacaaacgtgtttgtttatgtatatgtgtgtaaatctttatacacacacataatagcaaaaagtcccttcttttgaaatttactacaagttgtttt 46944315  T
Q  616 ggtgggggtctataannnnnnnnncttcttctttttataagaaagcgtttgtttttagtatattgttaaatgtgagagaggaaatgttatcagtccttta 715  Q
    |||||||||||||||          || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46944316 ggtgggggtctataatttttt----tttttctttttataagaaagcgtttgtttttagtatattgttaaatgtgagagaggaaatgttatcagtccttta 46944411  T
Q  716 acgtcccaaccttttaac 733  Q
    |||||||||| |||||||    
T  46944412 acgtcccaacattttaac 46944429  T

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