View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12990_low_3 (Length: 626)
Name: NF12990_low_3
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 20 - 625
Target Start/End: Original strand, 31213040 - 31213648
Alignment:
| Q |
20 |
atcaggtgcgcatgaaatccaatcccctaaggggtcggactgatgatattgttattcccataacacaaaatccaatgtggttcaacaaacaaaatgtggg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213040 |
atcaggtgcgcatgaaatccaatcccctaaggggtcggactgatgatattgttattcccataacacaaaatccaatgtggttcaacaaacaaaatgtggg |
31213139 |
T |
|
| Q |
120 |
tagttcaataagcatggatacattacccattattgatgacaccaattgtataggcgttgcttgctacttaacttttgtagcacatgatgatccaactaat |
219 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213140 |
tagttcaataagcatgaatacattacccattattgatgacaccaattgtataggcgttgcttgctacttaacttttgtagcacatgatgatccaactaat |
31213239 |
T |
|
| Q |
220 |
ttaggtgaaaaaaggtcacctcatattgtgttggttttccaaagtaaacaacatcgtcgctctacgtacaaatactcccatgcatcttgaaaacgatctg |
319 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213240 |
ttaggtgaacaaaggtcacctcatattgggttggttttccaaagtaaacaacattgtcgctctacgtacaaatactcccatgcatcttgaaaacgatctg |
31213339 |
T |
|
| Q |
320 |
gtcactgttgacttagaacacatgttgctaatttttctccctagggaatcatttatggagtatatcacaag----caacgtgggtgctttccccagagaa |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31213340 |
gtcactgttgacttagaacacatgttgctaatttttctccctagggaatcatttatggagtatatcacaagtggacaacgtgggtgctttccccagagaa |
31213439 |
T |
|
| Q |
416 |
ttattaaattggaaggttatgctgtgcatccccccagattgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaatt |
515 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213440 |
ttattaaattggaaggttatgctgtgcatccccccagattgcatttagaggtcaaaaattgaggttatcgatggatatttaaggaggatttggagcaatt |
31213539 |
T |
|
| Q |
516 |
aaacccacaaatgatgtacggtggaaattcctcggttcaaaacaagtactccctccatcccttagtataaacatatttcagttatgcctacttctcgctt |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31213540 |
aaacccacaaatgatgtacggtggaaattcctcggttcaaaacaagtactccctccgt-ccttagtataaacatatttcagttatgcctacttctcgctt |
31213638 |
T |
|
| Q |
616 |
tctgtgctgc |
625 |
Q |
| |
|
|| ||||||| |
|
|
| T |
31213639 |
tcagtgctgc |
31213648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 68 - 227
Target Start/End: Original strand, 31247477 - 31247633
Alignment:
| Q |
68 |
ttgttattcccataacacaaaatccaatgtggttcaacaaacaaaatgtgggtagttcaataagcatggatacattacccattattgatgacaccaattg |
167 |
Q |
| |
|
|||||||||||| ||| |||| ||||| ||||||||||||||||||||| ||||||||||||||||| || ||| ||| |||| |||| ||||| |
|
|
| T |
31247477 |
ttgttattcccaaaactcaaattccaacgtggttcaacaaacaaaatgtaggtagttcaataagcattgacccatcacctgttatgcatga---caattt |
31247573 |
T |
|
| Q |
168 |
tataggcgttgcttgctacttaacttttgtagcacatgatgatccaactaatttaggtga |
227 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| |||| |
|
|
| T |
31247574 |
gataggcgttgcttgctgcttaacttttgtagcacgtgatggtccaactaatttaagtga |
31247633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 454 - 554
Target Start/End: Original strand, 31247902 - 31248002
Alignment:
| Q |
454 |
ttgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaattaaacccacaaatgatgtacggtggaaattcctcggttc |
553 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
31247902 |
ttgcatttggaggtaaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaacccacaaatgatgtacagtggaaattcctcagttc |
31248001 |
T |
|
| Q |
554 |
a |
554 |
Q |
| |
|
| |
|
|
| T |
31248002 |
a |
31248002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 454 - 531
Target Start/End: Complemental strand, 31264164 - 31264087
Alignment:
| Q |
454 |
ttgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaattaaacccacaaatgatg |
531 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||||||||||||||||| |||| || |||||| | ||||||||| |
|
|
| T |
31264164 |
ttgcatttggaggtcaaaaattgtggttatcattggatatttaaggaggatctggaacatttaaacgcgcaaatgatg |
31264087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 454 - 526
Target Start/End: Original strand, 31304800 - 31304872
Alignment:
| Q |
454 |
ttgcatttagaggtcaaaaattgtggttatcgatggatatttaaggaggatttggagcaattaaacccacaaa |
526 |
Q |
| |
|
|||||||| ||||| || || |||||||| ||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
31304800 |
ttgcattttgaggtaaagaactgtggttacagatggatatttgaggaggatctggagcaattaaacccacaaa |
31304872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 31304574 - 31304649
Alignment:
| Q |
63 |
tgatattgttattcccataacacaaaatccaatgtggttcaacaaacaaaatgtgggtagttcaataagcatggat |
138 |
Q |
| |
|
||||||| ||||||| | ||| |||| ||||||||||| ||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
31304574 |
tgatattattattcctagaactcaaattccaatgtggtgcaatacacaaaatgtgggtagttcaataaggatggat |
31304649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 295 - 367
Target Start/End: Original strand, 31247736 - 31247808
Alignment:
| Q |
295 |
tcccatgcatcttgaaaacgatctggtcactgttgacttagaacacatgttgctaatttttctccctagggaa |
367 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||| ||||| ||||| ||| ||||||||||| || || |||||||| |
|
|
| T |
31247736 |
tcccatacatcttggaaaagatctggtcacagttgatttagatcacttgttgctaattcttttcactagggaa |
31247808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 31304675 - 31304718
Alignment:
| Q |
185 |
acttaacttttgtagcacatgatgatccaactaatttaggtgaa |
228 |
Q |
| |
|
||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
31304675 |
acttaacatttgtagcacatgatgatccaaatagtttaggtgaa |
31304718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 13615245 - 13615410
Alignment:
| Q |
63 |
tgatattgttattcccataacacaaaatccaatgtggttcaacaaacaaaatgtgggtagttcaataagcatggatacattacccattattgatgacacc |
162 |
Q |
| |
|
||||||| | ||||| | ||| |||| ||||||||||| || | |||||||||||||||||||||||| ||||| |||||||||| || ||| | |
|
|
| T |
13615245 |
tgatattatcattccaagaactcaaattccaatgtggtgcagtacacaaaatgtgggtagttcaataagaatggacccattacccatcatgcgtgaaaag |
13615344 |
T |
|
| Q |
163 |
aattgtataggcgttgcttgctacttaacttttgtagcacatgatgatccaactaatttaggtgaa |
228 |
Q |
| |
|
|| || || || || ||||| | |||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
13615345 |
aactgcattggtgtggcttgttgcttaacatttgtagcacatgatgatccaaatagtttaggtgaa |
13615410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 474 - 559
Target Start/End: Original strand, 13615656 - 13615741
Alignment:
| Q |
474 |
ttgtggttatcgatggatatttaaggaggatttggagcaattaaacccac--aaatgatgtacggtggaaattcctcggttcaaaaca |
559 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||| | ||||||| || | |||||||||||| |||||||||| |
|
|
| T |
13615656 |
ttgtggttatcgttggatatttgaggaggatttggagcaattaaacccccgcaaatgat-ta-gttggaaattcctcagttcaaaaca |
13615741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University