View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_low_5 (Length: 550)
Name: NF12990_low_5
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 243 - 532
Target Start/End: Original strand, 16969082 - 16969368
Alignment:
| Q |
243 |
catcaaaatcagaaccattagagtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggttgtcttcatcaccaacaaagttttcatc |
342 |
Q |
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| T |
16969082 |
catcagaatcagaaccat---agtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggttgtcttcatcaccaacaaagttttcatc |
16969178 |
T |
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| Q |
343 |
acattgctgcactgacccttcttcatcttgatcaccataatcatcatgttcaatggaaattaccttggcaccttgaggaaccacaaaaggttcttcattt |
442 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
16969179 |
acattgctgcactgacccttcttcatcttgaccaccataatcatcatgttcaatggaaattaccttggcaccttcaggaaccacaaaaggttcttcattt |
16969278 |
T |
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| Q |
443 |
agcatcatattcttagaatcagaagcagaatcaaaatacatatcttcatcaccatcatcatctccatcaatgaaaataacaaaaggttct |
532 |
Q |
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| T |
16969279 |
agcatcatattcttagaatcagaagcagattcaaaatacatatcttcatcaccatcatcatctccatcaatgaaaataacaaaaggttct |
16969368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 12 - 47
Target Start/End: Original strand, 16968992 - 16969027
Alignment:
| Q |
12 |
catcatcatcagcatccatttttactacatctttaa |
47 |
Q |
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| T |
16968992 |
catcatcatcagcatccatttttactacatctttaa |
16969027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 324
Target Start/End: Original strand, 17008518 - 17008580
Alignment:
| Q |
262 |
agagtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggttgtcttcatc |
324 |
Q |
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| T |
17008518 |
agagtgttcttcatcactctcactatactcatcagaacatattgaaatcgggttatcttcatc |
17008580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 263 - 315
Target Start/End: Complemental strand, 10601113 - 10601061
Alignment:
| Q |
263 |
gagtgttcttcatcactttcaccatactcatctgaatgtattgaaatagggtt |
315 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||||| ||| ||||| |
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| T |
10601113 |
gagtgtttttcatcactttcaccatattcatctgaaattattgtaatcgggtt |
10601061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 264 - 298
Target Start/End: Complemental strand, 35262515 - 35262481
Alignment:
| Q |
264 |
agtgttcttcatcactttcaccatactcatctgaa |
298 |
Q |
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| T |
35262515 |
agtgttcttcatcactttcaccatactcatctgaa |
35262481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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