View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12990_low_6 (Length: 486)
Name: NF12990_low_6
Description: NF12990
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12990_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 37167980 - 37168215
Alignment:
| Q |
16 |
gtttcatgtattaaattaacttataatctaatctaaatacgtaaagaacatgaaagaaattaagatgctgcttttgttatctagtttattgttttaagtt |
115 |
Q |
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| T |
37167980 |
gtttcatgtattaaattaacttataatctaatctaaatacgtaaagaacatgaaagaaattaagatgctgcttttgttatctagtttattgttttaagtt |
37168079 |
T |
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| Q |
116 |
ggtagcatgatgtcacagtggtcttcagcagatcgtagtttattgtaaatcaaggttgagttcctgtctaatgtaacatattttgtcctattgtcggcct |
215 |
Q |
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| T |
37168080 |
ggtagcatgatgtcacagtggtcttcagcagatcgtagtttattgtaaatcaaggttgagttcctgtctaatgtaacatattttgtcctattgtcggcct |
37168179 |
T |
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| Q |
216 |
atcaaaatagcgggaatattggtcagtgttttcttt |
251 |
Q |
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| T |
37168180 |
atcaaaatagcgggaatattggtcagtgttttcttt |
37168215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 379 - 472
Target Start/End: Original strand, 37168371 - 37168464
Alignment:
| Q |
379 |
ctaaggattgttctggactaaccaaaaaactacgctcaacactttggagtcctaaatactactacaccatcgagcaaaaggctaatcatgtgat |
472 |
Q |
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| T |
37168371 |
ctaaggattgttctggactaaccaaaaaactatgctcaacactttggagtcctaaatactactacaccatcgagcaaaaggctaatcttgtgat |
37168464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 246 - 335
Target Start/End: Original strand, 37168235 - 37168325
Alignment:
| Q |
246 |
ttctttggaatattgtcctctcattatagttctactttgtaaact-aaggattatgaaccaaacaaaacgttgcttaatgcttatactcct |
335 |
Q |
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| T |
37168235 |
ttctttggaatattgtcctctcattatagttctactttgtaaactaaaggattatgaaccaaacaatacgttgcttaatgcttatactcct |
37168325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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