View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_11 (Length: 588)
Name: NF12991_high_11
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 479; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 2 - 563
Target Start/End: Original strand, 25468193 - 25468752
Alignment:
| Q |
2 |
aaattattttaatcactagtatattgttccctctcatctaaaatacactaaagttgccaaaatgcaaagtcactcaagcattttccgttggccagttcag |
101 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25468193 |
aaattattttaatcactagtatattgttccctctcatctaaaatacactaaagtcgccaaaatgcaaaatcactcaagcattttccgttggccagttcag |
25468292 |
T |
|
| Q |
102 |
tttgttaaaattgacagataaaaggttttcgagagacaaggatgtatgacacatgatattgcctaagtggtttgtggtttaagaacggagaacccaacaa |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
25468293 |
tttgttaaaattgacagataaaaggttttcgagagacaaggatgtatgaca--tgatattgcctaagtggtttgtggtttaagaacgaagaacccaacaa |
25468390 |
T |
|
| Q |
202 |
acacaatgacttttggaaccattaacagtagaattttacataaatcagtttaaaacaaaattgtactattttgcattatgataatttctaattgtttttt |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
25468391 |
acacaatgacttttggaaccattaacagtagaatttcacataaatcagtttaaaacacaattgtactattttgcattatgataatttctaattgtttttt |
25468490 |
T |
|
| Q |
302 |
gtcactttagtccatggatccacatcatacatccttgattgtcaaaacaattgtcagctcatctttgaatggtcaattttaacgtcaaggacttaattgg |
401 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25468491 |
gtcactttagtccatagatccacatcatacatccttgattgtcaaaacaattgtcagctcatcttttaatggtcaattttaacgtcaaggacttaattgg |
25468590 |
T |
|
| Q |
402 |
ttaacataggtatacatccagggactattttacattttatcccgagtagggaccattttaacaacaaaattcataatcagaaactaaaatggctgtatcc |
501 |
Q |
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|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| || ||| |||| ||||| |||||||||| ||||| | |
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| T |
25468591 |
ttaacataggtatacattcagggactattttacattttatcccgagtagggaccattttgacagcacaatgcatagtcagagactaaaatggttgtattc |
25468690 |
T |
|
| Q |
502 |
cttaataacaaatgaggtctatctaacaaatcagttatactatttttaaagggttgaatgca |
563 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
25468691 |
cttaataacaaatgaggtctatctaacaaatcacttatactttttttaaagggttgaatgca |
25468752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 391 - 534
Target Start/End: Original strand, 25473667 - 25473811
Alignment:
| Q |
391 |
gacttaattggttaacataggtatacatccagggactattttacattttatcccgagt-agggaccattttaacaacaaaattcataatcagaaactaaa |
489 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| |||||||||||||||||||||| |||| |||||||||| | ||| | | || ||| |||| || ||| |
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| T |
25473667 |
gacttaattggctaacagaggtacacatctagggactattttacattttatcttgagtcagggaccattgtgacagcgatatgcatggtcagggaccaaa |
25473766 |
T |
|
| Q |
490 |
atggctgtatcccttaataacaaatgaggtctatctaacaaatca |
534 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
25473767 |
atggttgtatcccttaataacaaatgaggtctatttaacaaatca |
25473811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 278
Target Start/End: Complemental strand, 25473424 - 25473346
Alignment:
| Q |
200 |
aaacacaatgacttttggaaccattaacagtagaattttacataaatcagtttaaaacaaaattgtactattttgcatt |
278 |
Q |
| |
|
||||||||||| ||| ||||||||| || ||| ||| |||||||||||| |||||| ||||||||||||||||||| |
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| T |
25473424 |
aaacacaatgaatttaagaaccattagtagcagactttcacataaatcagtacaaaacacaattgtactattttgcatt |
25473346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 3622243 - 3622186
Alignment:
| Q |
5 |
ttattttaatcactagtatattgttccctctcatctaaaatacactaaagttgccaaa |
62 |
Q |
| |
|
|||||||||||||| |||||| ||| | |||||||||||||||||||| || ||||| |
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|
| T |
3622243 |
ttattttaatcactcgtatatcattctcactcatctaaaatacactaaaattaccaaa |
3622186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 555 - 588
Target Start/End: Original strand, 25468915 - 25468948
Alignment:
| Q |
555 |
ttgaatgcataactagctaacaagccttgcaaag |
588 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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|
| T |
25468915 |
ttgaatgcagaactagctaacaagccttgcaaag |
25468948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 376 - 448
Target Start/End: Original strand, 7626309 - 7626381
Alignment:
| Q |
376 |
aattttaacgtcaaggacttaattggttaacataggtatacatccagggactattttacattttatcccgagt |
448 |
Q |
| |
|
||||| ||||||||||| | |||||||||||| | ||||||||||| ||||||||||||||||||| |||| |
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|
| T |
7626309 |
aatttaaacgtcaaggattaaattggttaacagaagtatacatccaaaaactattttacattttatcctgagt |
7626381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 4213881 - 4213822
Alignment:
| Q |
5 |
ttattttaatcactagtatattgttccctctcatctaaaatacactaaagttgccaaaat |
64 |
Q |
| |
|
|||||||||||||| ||||| |||| ||||||||||||||||| |||||| ||||||| |
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|
| T |
4213881 |
ttattttaatcactcatatatcgttctctctcatctaaaatacattaaagtcaccaaaat |
4213822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 512793 - 512843
Alignment:
| Q |
5 |
ttattttaatcactagtatattgttccctctcatctaaaatacactaaagt |
55 |
Q |
| |
|
|||||||||||||| | |||| ||| |||||||||||||||||||||||| |
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|
| T |
512793 |
ttattttaatcactcatctattattctctctcatctaaaatacactaaagt |
512843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 6793544 - 6793594
Alignment:
| Q |
5 |
ttattttaatcactagtatattgttccctctcatctaaaatacactaaagt |
55 |
Q |
| |
|
|||||||||||||| | ||| |||| |||||||||||||||||||||||| |
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|
| T |
6793544 |
ttattttaatcactcatctatcgttctctctcatctaaaatacactaaagt |
6793594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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