View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_high_16 (Length: 459)

Name: NF12991_high_16
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_high_16
NF12991_high_16
[»] chr3 (10 HSPs)
chr3 (59-440)||(3817431-3817804)
chr3 (59-270)||(5164568-5164779)
chr3 (109-270)||(8434170-8434334)
chr3 (59-253)||(27149098-27149293)
chr3 (334-440)||(27149350-27149457)
chr3 (346-407)||(8434652-8434714)
chr3 (59-94)||(5165391-5165426)
chr3 (59-94)||(8435461-8435496)
chr3 (59-94)||(27149989-27150024)
chr3 (12-49)||(14555011-14555048)
[»] chr6 (1 HSPs)
chr6 (59-271)||(31742046-31742258)
[»] chr7 (1 HSPs)
chr7 (59-177)||(48119331-48119450)
[»] chr5 (6 HSPs)
chr5 (12-51)||(37825837-37825876)
chr5 (13-51)||(37713566-37713604)
chr5 (12-51)||(37596294-37596333)
chr5 (12-51)||(37641845-37641884)
chr5 (16-49)||(37535074-37535107)
chr5 (16-44)||(37535047-37535075)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 59 - 440
Target Start/End: Complemental strand, 3817804 - 3817431
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 158  Q
    ||||||||||| |||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817804 tactccctccgatcctttataaaagagacaatttgaaacttttttttttcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 3817705  T
Q  159 ccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtaca 258  Q
    |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| || || |||||||||||||||    
T  3817704 ccatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttaaactactttagccgtaca 3817605  T
Q  259 cacagaccaacacatgnnnnnnngtagtactccctagttttcttgttggcgggtacattcctct---aaactttaatttatttggcggggtacacacaag 355  Q
    ||||||||||||||||                  |||||||||||||||||||||||||| |||   |||    ||  ||||||||||||||||||||||    
T  3817604 cacagaccaacacatgaaaaaaa-----------tagttttcttgttggcgggtacattcatctaaaaaaaagaaaactatttggcggggtacacacaag 3817516  T
Q  356 ccaacaactattaatatatgcatcattcactttgatgtgttatggttatcttctgtactcacatatcatgggcatggagtctaat 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3817515 ccaacaactattaatatatgcatcattcactttgatgtgttatggttatcttctgtactcacatatcatgggcatggagtctaat 3817431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 59 - 270
Target Start/End: Original strand, 5164568 - 5164779
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 158  Q
    ||||| ||||| ||||||||| |||||||||||| ||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5164568 tactctctccgatcctttatacaagagacaattttaaacttttttttttcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 5164667  T
Q  159 ccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtaca 258  Q
     ||||||||||||||||||||||||||||| ||||||||||  ||||||||||||||||| ||||||||||||||||| ||||| ||||||||| ||| |    
T  5164668 tcatttatacccttattaagttggagacatgcaacctattctaatgcaaatgcatttattttgatacatattccccatgttgaactactttagcagtaga 5164767  T
Q  259 cacagaccaaca 270  Q
    ||||||||||||    
T  5164768 cacagaccaaca 5164779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 109 - 270
Target Start/End: Original strand, 8434170 - 8434334
Alignment:
Q  109 ctttttataagaaaatctctttaaatttaaactttattaaata---tgtaattccatttatacccttattaagttggagacatacaacctattcctatgc 205  Q
    ||||||||||||| | |||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  8434170 ctttttataagaatacctctttaaatttaaactttattaaatagtatgtaattccatttatacccttattaagttggagacatgcaacctattccaatgc 8434269  T
Q  206 aaatgcatttattatgatacatattccccatattgaattactttagccgtacacacagaccaaca 270  Q
    ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||    
T  8434270 aaatgcatttagtttgatacatattccccatgttgaactactttagccgtacacacaaaccaaca 8434334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 59 - 253
Target Start/End: Original strand, 27149098 - 27149293
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnn-ggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 157  Q
    ||||||||||||||||||||| |||||||||||| ||||        ||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  27149098 tactccctccggtcctttatacaagagacaatttaaaacttttttttggtcctttttataagaaaatctctttaaattcaaactttatcaaatatgtaat 27149197  T
Q  158 tccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagcc 253  Q
    | ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| || |||||||||| ||| ||||| || |||||||    
T  27149198 ttcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttggtacatattccacatgttgaactattttagcc 27149293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 334 - 440
Target Start/End: Original strand, 27149350 - 27149457
Alignment:
Q  334 tatttggcggggtacacacaagccaacaa-ctattaatatatgcatcattcactttgatgtgttatggttatcttctgtactcacatatcatgggcatgg 432  Q
    |||||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  27149350 tatttggcggggtacacacaggccaacaagctattaatatatgcatcattcactttcatgtgttatggttatcttctctactcacatatcatgggcatgg 27149449  T
Q  433 agtctaat 440  Q
    ||||||||    
T  27149450 agtctaat 27149457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 407
Target Start/End: Original strand, 8434652 - 8434714
Alignment:
Q  346 tacacacaagccaacaa-ctattaatatatgcatcattcactttgatgtgttatggttatctt 407  Q
    |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  8434652 tacacacatgccaacaagctattaatatatgcatcattcactttcatgtgttatggttatctt 8434714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 5165426 - 5165391
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttga 94  Q
    ||||||||||||||||||||||||||||||||||||    
T  5165426 tactccctccggtcctttataaaagagacaatttga 5165391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 8435496 - 8435461
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttga 94  Q
    ||||||||||||||||||||||||||||||||||||    
T  8435496 tactccctccggtcctttataaaagagacaatttga 8435461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 59 - 94
Target Start/End: Complemental strand, 27150024 - 27149989
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttga 94  Q
    ||||||||||||||||||||||||||||||||||||    
T  27150024 tactccctccggtcctttataaaagagacaatttga 27149989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 49
Target Start/End: Original strand, 14555011 - 14555048
Alignment:
Q  12 attatactaattgacgataacattcatttattagtatc 49  Q
    |||||||||||||||||||||||| ||| |||||||||    
T  14555011 attatactaattgacgataacattaattcattagtatc 14555048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 59 - 271
Target Start/End: Original strand, 31742046 - 31742258
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnnggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 158  Q
    |||||||| ||||| |||||| ||||||||||||||||        |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31742046 tactcccttcggtcatttatacaagagacaatttgaaatattttttggtcttttttataagaaaatctctttaaatttaaactttattaaatatgtaatt 31742145  T
Q  159 ccatttatacccttattaagttggagacatacaacctattcctatgcaaatgcatttattatgatacatattccccatattgaattactttagccgtaca 258  Q
     ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  31742146 tcatttatacccttattaagttggagacatgcaacctattccaatgcaaatgcatttattttgatacatattccccatgttgaactactttagccgtaca 31742245  T
Q  259 cacagaccaacac 271  Q
    ||||| |||||||    
T  31742246 cacaggccaacac 31742258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 59 - 177
Target Start/End: Original strand, 48119331 - 48119450
Alignment:
Q  59 tactccctccggtcctttataaaagagacaatttgaaacnnnnnnn-ggtcctttttataagaaaatctctttaaatttaaactttattaaatatgtaat 157  Q
    |||||||||||||||||| || |||||||||||||| ||        ||||||||||||||||||  ||||||||||||||||||||| ||||||  |||    
T  48119331 tactccctccggtcctttttataagagacaatttgagactttcttttggtcctttttataagaaacactctttaaatttaaactttatcaaatatacaat 48119430  T
Q  158 tccatttatacccttattaa 177  Q
    |||||||| | |||||||||    
T  48119431 tccatttaaaaccttattaa 48119450  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 37825837 - 37825876
Alignment:
Q  12 attatactaattgacgataacattcatttattagtatctt 51  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37825837 attatactaattgacgataacattcatttattagtatctt 37825876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 37713566 - 37713604
Alignment:
Q  13 ttatactaattgacgataacattcatttattagtatctt 51  Q
    |||||||||||||||||||||||||||||||||||||||    
T  37713566 ttatactaattgacgataacattcatttattagtatctt 37713604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 37596294 - 37596333
Alignment:
Q  12 attatactaattgacgataacattcatttattagtatctt 51  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  37596294 attatactaattgacgatatcattcatttattagtatctt 37596333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 51
Target Start/End: Original strand, 37641845 - 37641884
Alignment:
Q  12 attatactaattgacgataacattcatttattagtatctt 51  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  37641845 attatactaattgacgagaacattcatttattagtatctt 37641884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 49
Target Start/End: Original strand, 37535074 - 37535107
Alignment:
Q  16 tactaattgacgataacattcatttattagtatc 49  Q
    |||||||||||||||||||||||| |||||||||    
T  37535074 tactaattgacgataacattcattcattagtatc 37535107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 37535047 - 37535075
Alignment:
Q  16 tactaattgacgataacattcatttatta 44  Q
    |||||||||||||||||||||||||||||    
T  37535047 tactaattgacgataacattcatttatta 37535075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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