View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_high_17 (Length: 440)

Name: NF12991_high_17
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_high_17
NF12991_high_17
[»] scaffold2046 (1 HSPs)
scaffold2046 (15-164)||(910-1059)
[»] chr6 (26 HSPs)
chr6 (15-164)||(13750457-13750606)
chr6 (161-420)||(6124020-6124279)
chr6 (15-162)||(29415735-29415882)
chr6 (16-158)||(24441386-24441528)
chr6 (15-164)||(24267566-24267715)
chr6 (18-153)||(5109896-5110031)
chr6 (63-164)||(31468006-31468108)
chr6 (15-142)||(16132604-16132732)
chr6 (19-149)||(29847461-29847592)
chr6 (31-164)||(18259372-18259504)
chr6 (31-149)||(18659170-18659290)
chr6 (31-153)||(28948303-28948427)
chr6 (31-153)||(16447971-16448094)
chr6 (31-158)||(19102679-19102807)
chr6 (31-127)||(19443231-19443326)
chr6 (42-153)||(23532095-23532206)
chr6 (42-164)||(8226939-8227061)
chr6 (53-142)||(20177737-20177827)
chr6 (53-142)||(22158164-22158254)
chr6 (58-158)||(5289300-5289398)
chr6 (34-121)||(25753202-25753288)
chr6 (34-121)||(25755372-25755458)
chr6 (302-420)||(6115306-6115424)
chr6 (63-158)||(19174895-19174991)
chr6 (72-127)||(25348115-25348170)
chr6 (63-121)||(16136057-16136115)
[»] chr8 (16 HSPs)
chr8 (15-158)||(22583838-22583981)
chr8 (15-164)||(23889525-23889673)
chr8 (15-164)||(24496322-24496474)
chr8 (18-164)||(24979836-24979982)
chr8 (15-163)||(34302270-34302419)
chr8 (15-164)||(23451191-23451343)
chr8 (50-162)||(17611504-17611616)
chr8 (15-142)||(32950645-32950773)
chr8 (34-158)||(3273613-3273739)
chr8 (31-153)||(26220282-26220405)
chr8 (31-127)||(22532331-22532426)
chr8 (31-127)||(22537016-22537111)
chr8 (31-127)||(39694476-39694572)
chr8 (58-127)||(44522402-44522470)
chr8 (89-153)||(26222538-26222603)
chr8 (72-127)||(39364532-39364587)
[»] scaffold0273 (1 HSPs)
scaffold0273 (15-164)||(7399-7549)
[»] chr1 (14 HSPs)
chr1 (15-162)||(21473514-21473661)
chr1 (15-164)||(52983946-52984096)
chr1 (15-164)||(18824340-18824489)
chr1 (18-162)||(18271047-18271191)
chr1 (18-162)||(18275701-18275845)
chr1 (34-164)||(51476711-51476842)
chr1 (31-164)||(13527910-13528041)
chr1 (30-158)||(7320792-7320920)
chr1 (31-127)||(51324262-51324357)
chr1 (58-153)||(20058215-20058310)
chr1 (19-145)||(21660111-21660239)
chr1 (45-126)||(21239257-21239338)
chr1 (31-127)||(7791756-7791850)
chr1 (58-127)||(20030866-20030934)
[»] scaffold0117 (2 HSPs)
scaffold0117 (18-164)||(25854-26000)
scaffold0117 (35-162)||(40412-40540)
[»] chr3 (32 HSPs)
chr3 (15-162)||(24340125-24340272)
chr3 (15-162)||(14818806-14818954)
chr3 (15-164)||(52212610-52212760)
chr3 (15-158)||(52338133-52338276)
chr3 (26-164)||(12536372-12536511)
chr3 (15-164)||(12159001-12159155)
chr3 (15-164)||(13511785-13511937)
chr3 (34-164)||(37641696-37641827)
chr3 (31-164)||(17547667-17547798)
chr3 (31-164)||(36167250-36167384)
chr3 (31-120)||(9511115-9511204)
chr3 (31-120)||(9519090-9519179)
chr3 (19-138)||(3393937-3394057)
chr3 (31-153)||(10551034-10551157)
chr3 (19-149)||(12276533-12276664)
chr3 (36-164)||(45530807-45530937)
chr3 (58-164)||(13667308-13667414)
chr3 (31-164)||(29172050-29172181)
chr3 (19-127)||(178664-178773)
chr3 (15-138)||(18366693-18366817)
chr3 (31-153)||(34851498-34851619)
chr3 (34-121)||(37038812-37038898)
chr3 (31-127)||(13029357-13029452)
chr3 (31-153)||(21619112-21619235)
chr3 (42-164)||(22146967-22147089)
chr3 (31-105)||(19568407-19568480)
chr3 (58-164)||(11849819-11849923)
chr3 (31-127)||(13025765-13025860)
chr3 (65-164)||(15517374-15517473)
chr3 (31-127)||(17513588-17513682)
chr3 (60-126)||(42324199-42324265)
chr3 (58-151)||(20188461-20188552)
[»] scaffold0453 (1 HSPs)
scaffold0453 (15-164)||(3836-3986)
[»] chr5 (14 HSPs)
chr5 (15-164)||(8952219-8952368)
chr5 (18-164)||(22777251-22777397)
chr5 (18-164)||(22357085-22357231)
chr5 (18-164)||(10817531-10817678)
chr5 (63-153)||(21297585-21297676)
chr5 (26-163)||(18318396-18318534)
chr5 (65-153)||(21311130-21311219)
chr5 (58-138)||(21405854-21405935)
chr5 (15-127)||(22470588-22470699)
chr5 (42-164)||(40726411-40726533)
chr5 (58-164)||(20765478-20765584)
chr5 (15-99)||(21663321-21663405)
chr5 (31-158)||(23539493-23539618)
chr5 (31-141)||(22007085-22007194)
[»] scaffold0181 (1 HSPs)
scaffold0181 (15-164)||(25699-25849)
[»] scaffold0037 (2 HSPs)
scaffold0037 (31-164)||(113166-113300)
scaffold0037 (41-164)||(118010-118134)
[»] scaffold0004 (3 HSPs)
scaffold0004 (18-162)||(60150-60294)
scaffold0004 (31-164)||(75511-75645)
scaffold0004 (31-153)||(72675-72797)
[»] chr4 (24 HSPs)
chr4 (15-162)||(16224102-16224249)
chr4 (15-164)||(6512344-6512493)
chr4 (15-164)||(14931305-14931454)
chr4 (18-162)||(15374054-15374198)
chr4 (15-162)||(15368253-15368400)
chr4 (15-164)||(20898928-20899077)
chr4 (15-162)||(15371761-15371909)
chr4 (31-153)||(14280980-14281103)
chr4 (38-164)||(18230461-18230587)
chr4 (31-164)||(54798103-54798237)
chr4 (15-127)||(3338129-3338240)
chr4 (34-127)||(9870648-9870740)
chr4 (45-164)||(22354399-22354518)
chr4 (31-149)||(10705468-10705587)
chr4 (31-149)||(10919238-10919357)
chr4 (31-164)||(2584344-2584475)
chr4 (31-164)||(4830357-4830488)
chr4 (31-164)||(4833652-4833783)
chr4 (31-164)||(13447251-13447382)
chr4 (31-127)||(15991026-15991121)
chr4 (56-162)||(15403265-15403370)
chr4 (31-164)||(27028467-27028598)
chr4 (31-141)||(16157538-16157647)
chr4 (102-153)||(4615319-4615371)
[»] scaffold0429 (1 HSPs)
scaffold0429 (16-164)||(2179-2328)
[»] scaffold0377 (1 HSPs)
scaffold0377 (15-164)||(16281-16432)
[»] chr7 (22 HSPs)
chr7 (34-164)||(11054431-11054562)
chr7 (19-149)||(8756332-8756463)
chr7 (19-149)||(40554700-40554831)
chr7 (38-164)||(13256413-13256539)
chr7 (34-164)||(19486165-19486295)
chr7 (15-109)||(8249427-8249520)
chr7 (35-164)||(48274202-48274332)
chr7 (31-130)||(13898230-13898328)
chr7 (34-127)||(13698841-13698933)
chr7 (31-127)||(33001920-33002014)
chr7 (58-151)||(17467609-17467700)
chr7 (58-151)||(17585514-17585605)
chr7 (31-126)||(29004831-29004923)
chr7 (31-153)||(3288958-3289078)
chr7 (15-121)||(48744297-48744402)
chr7 (53-130)||(10063122-10063199)
chr7 (15-67)||(5295860-5295912)
chr7 (15-67)||(5297033-5297085)
chr7 (58-151)||(37380615-37380706)
chr7 (31-158)||(21734057-21734182)
chr7 (31-158)||(21734616-21734741)
chr7 (15-63)||(5294687-5294735)
[»] scaffold0247 (1 HSPs)
scaffold0247 (15-162)||(17430-17577)
[»] chr2 (10 HSPs)
chr2 (18-164)||(22703696-22703843)
chr2 (15-142)||(21245426-21245554)
chr2 (15-142)||(24273213-24273341)
chr2 (31-164)||(6477432-6477563)
chr2 (34-164)||(19358606-19358740)
chr2 (63-164)||(24087798-24087899)
chr2 (45-127)||(43707253-43707335)
chr2 (31-127)||(26904164-26904258)
chr2 (63-163)||(45617836-45617937)
chr2 (45-127)||(28349925-28350006)
[»] scaffold0149 (1 HSPs)
scaffold0149 (15-164)||(35722-35871)
[»] scaffold0371 (1 HSPs)
scaffold0371 (15-164)||(3597-3749)
[»] scaffold0962 (1 HSPs)
scaffold0962 (15-164)||(794-944)
[»] scaffold0331 (1 HSPs)
scaffold0331 (31-164)||(4424-4556)
[»] scaffold0083 (2 HSPs)
scaffold0083 (31-127)||(10952-11048)
scaffold0083 (31-127)||(5234-5330)
[»] scaffold0126 (1 HSPs)
scaffold0126 (19-145)||(6787-6914)
[»] scaffold0720 (1 HSPs)
scaffold0720 (31-164)||(640-772)
[»] scaffold0174 (3 HSPs)
scaffold0174 (31-152)||(19438-19560)
scaffold0174 (31-120)||(11154-11243)
scaffold0174 (31-120)||(5034-5123)
[»] scaffold0107 (1 HSPs)
scaffold0107 (15-164)||(3613-3762)
[»] scaffold0008 (1 HSPs)
scaffold0008 (31-152)||(72389-72511)
[»] scaffold0447 (2 HSPs)
scaffold0447 (19-138)||(7598-7718)
scaffold0447 (19-138)||(12212-12332)
[»] scaffold0383 (1 HSPs)
scaffold0383 (19-138)||(10207-10327)
[»] scaffold0175 (1 HSPs)
scaffold0175 (33-164)||(18568-18698)
[»] scaffold0017 (1 HSPs)
scaffold0017 (53-139)||(730-816)
[»] scaffold1276 (1 HSPs)
scaffold1276 (38-164)||(861-986)
[»] scaffold0256 (1 HSPs)
scaffold0256 (31-127)||(2042-2138)
[»] scaffold0825 (1 HSPs)
scaffold0825 (42-127)||(594-679)
[»] scaffold0123 (2 HSPs)
scaffold0123 (34-127)||(7033-7125)
scaffold0123 (31-153)||(1466-1586)
[»] scaffold0113 (1 HSPs)
scaffold0113 (38-130)||(35245-35337)
[»] scaffold0042 (1 HSPs)
scaffold0042 (22-127)||(51966-52070)
[»] scaffold0080 (2 HSPs)
scaffold0080 (31-127)||(29741-29835)
scaffold0080 (31-127)||(35206-35300)
[»] scaffold0021 (1 HSPs)
scaffold0021 (31-164)||(147344-147475)
[»] scaffold0106 (1 HSPs)
scaffold0106 (58-127)||(21741-21810)
[»] scaffold0022 (1 HSPs)
scaffold0022 (44-164)||(117148-117268)
[»] scaffold0309 (1 HSPs)
scaffold0309 (31-141)||(8881-8990)
[»] scaffold0490 (1 HSPs)
scaffold0490 (31-141)||(5626-5734)


Alignment Details
Target: scaffold2046 (Bit Score: 130; Significance: 3e-67; HSPs: 1)
Name: scaffold2046
Description:

Target: scaffold2046; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 1059 - 910
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1059 cacagactaagtttctaatcaattttggggtttgggtcgatggaaattgggattttcacttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 960  T
Q  115 atgtgagatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  959 atgtgaggtttggaaatcgatttttgggtggttgaaacttgaatctttct 910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 13750457 - 13750606
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  13750457 cacagactaagtttctaatcaattttggggtttgggtcgatggaaattgggattttcacttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 13750556  T
Q  115 atgtgagatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  13750557 atgtgaggtttggaaatcgatttttgggtggttgaaacttgaatctttct 13750606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 161 - 420
Target Start/End: Complemental strand, 6124279 - 6124020
Alignment:
Q  161 ttctccttggaatctaacgccatcgacttattgagatctataaatgcaagaaggctgagaacattttttctacagcaaacaaattatcgagggactgctc 260  Q
    ||||| ||||||||||||||||| || || |||  ||| ||| |||||||  ||||| ||||  |||| || || |  |||||| ||||||| |||| ||    
T  6124279 ttctcattggaatctaacgccattgatttgttggcatcaatagatgcaagtcggctgcgaacgattttccttcaacggacaaatgatcgaggcactggtc 6124180  T
Q  261 ggatgacaagagagttgtctgttattttgagattcaaacgcttacgcgcattgaatttgtcccgttcatctttaaagatgtttccatatttaattggtaa 360  Q
    |||||||||||||| ||||| ||||||||| ||||||| |||||||  ||||||||||||||||||| |||||||||||||| ||  ||||| |||||||    
T  6124179 ggatgacaagagagctgtctcttattttgacattcaaaagcttacgtacattgaatttgtcccgttcttctttaaagatgttgcctgatttagttggtaa 6124080  T
Q  361 attgaagcatttaagatatctcgacttatcatggtgtgtaaaactagcaagacttcccaa 420  Q
    |||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||||    
T  6124079 attgaagcatttgagatatcttgacttatcttggtgtgtaaaactaacaagacttcccaa 6124020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 29415735 - 29415882
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  29415735 cacagactaagtttccaatcagtattggggtttgggttgatggaaattgcgattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagagatt 29415833  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| ||||||| |||||||||||||||||||| ||||||||    
T  29415834 atgtgaggtttgggaaatcaatttttgggtggttgaaacttgaatcttt 29415882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 16 - 158
Target Start/End: Complemental strand, 24441528 - 24441386
Alignment:
Q  16 acagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatta 115  Q
    |||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  24441528 acagactaagtttccaatcaatattggggtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatta 24441430  T
Q  116 tgtgagattt-ggaaatcgatttttgggtggttgaaactcgaat 158  Q
    |||| | ||| |||||||||||||||||||||||||||| ||||    
T  24441429 tgtggggtttgggaaatcgatttttgggtggttgaaacttgaat 24441386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 24267715 - 24267566
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24267715 cacagactaagtttccaatcagtattggggtttgagtcgatgggaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatt 24267617  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||| ||||| ||||||||||| |||| |||||    
T  24267616 atgtgaggtttgggaaatcgatgtttggctggttgaaacttgaatttttct 24267566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 5109896 - 5110031
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||| ||||||    
T  5109896 agactaagtttccaatcagtattggggtttgggttgatggaaattgggattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagatattatg 5109994  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaact 153  Q
    |||| ||| |||||||||||||||| |||||||||||    
T  5109995 tgaggtttgggaaatcgatttttggttggttgaaact 5110031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 31468006 - 31468108
Alignment:
Q  63 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| |||| ||    
T  31468006 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaaatcgatttttgggtggttgaaacttgaatttt 31468105  T
Q  162 tct 164  Q
    |||    
T  31468106 tct 31468108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 16132604 - 16132732
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||||||||||||   ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| ||||||||    
T  16132604 cacagactaagttcataatcagttttggggtttgggtcgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagatt 16132703  T
Q  115 atgtgagattt-ggaaatcgatttttggg 142  Q
    ||||||| ||| || ||||||||||||||    
T  16132704 atgtgaggtttggggaatcgatttttggg 16132732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 29847461 - 29847592
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||  |||  |||||||||||||| |||||||| |||||||||| ||||||||||||    
T  29847461 gactaagttcccaatcagttttcgggtttgggtcgatggaaattggagtttatgcttgaaaagtcggagtctaaacatttttgcaaacaagagattatgt 29847560  T
Q  119 gagattt-ggaaatcgatttttgggtggttga 149  Q
    ||| ||| ||||||||||||| ||||||||||    
T  29847561 gaggtttgggaaatcgattttggggtggttga 29847592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 18259372 - 18259504
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||||| ||| ||||  ||| ||||||||||||||||||||||||||||||| | |||| ||||||||||||| |||||||||| | |||||||    
T  18259372 aatcagttttggagtt-gggttaatgaaaattgggattttcgcttgaaaagtcggtgtttgaacg-ttttgcaaataagtgattatgtgaggttttggaa 18259469  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  18259470 atcgatttttgggtggttgaaacttgaatttttct 18259504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 18659290 - 18659170
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt--gga 128  Q
    ||||||||||||||||||||| ||||||| |||  ||||  |||||||||||||| ||||||||||||||||||| ||||||||||||||| |||  |||    
T  18659290 aatcagttttggggtttgggttgatggaagttgaaatttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgtgaggttttggga 18659191  T
Q  129 aatcgatttttgggtggttga 149  Q
    |||||||||| ||||||||||    
T  18659190 aatcgattttggggtggttga 18659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 28948427 - 28948303
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    ||||| ||||||||||||||| |||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||    
T  28948427 aatcaattttggggtttgggttgatgaaaattggaatttttgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttttggaa 28948328  T
Q  130 atcgatttttggg-tggttgaaact 153  Q
    |  |||| ||||| |||||||||||    
T  28948327 aatgattcttgggatggttgaaact 28948303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 16447971 - 16448094
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||| | ||||  |||| ||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  16447971 aatcagtttttgagtttggtttgatgataatttggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 16448070  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    ||||||||||||||||||||||||    
T  16448071 atcgatttttgggtggttgaaact 16448094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 19102679 - 19102807
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||  | |||| ||||||||||||||||||||| |||  ||||||||| |||||||||||| || |||||||||| | |||||||    
T  19102679 aatcagtttttgagtttgaattgatgaaaattgggattttcgcttgaagagtaagtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 19102778  T
Q  130 atcgatttttgggtggttgaaactcgaat 158  Q
    | |||||||||||||||||||||| ||||    
T  19102779 accgatttttgggtggttgaaactggaat 19102807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 19443231 - 19443326
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||||||||| |||||    
T  19443231 aatcagttttggggtttgggtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttgg 19443326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 23532095 - 23532206
Alignment:
Q  42 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtg-agatttggaaatcgatttttg 140  Q
    |||||||||| |||||||| |||||||||| |||||| | |||||||||||||| ||||||||||||| ||||||||| || |||||||| |||||||||    
T  23532095 gggtttgggttgatggaaactgggattttcacttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaagttttggaaaccgatttttg 23532193  T
Q  141 ggtggttgaaact 153  Q
    ||||||| |||||    
T  23532194 ggtggtttaaact 23532206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 8226939 - 8227061
Alignment:
Q  42 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttg 140  Q
    |||||||||| |||| ||| ||| ||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| | |||||||| |||||||||    
T  8226939 gggtttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttg 8227037  T
Q  141 ggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||| |||| |||||    
T  8227038 ggtggtttaaacttgaatttttct 8227061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 142
Target Start/End: Complemental strand, 20177827 - 20177737
Alignment:
Q  53 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttggg 142  Q
    ||||||||||||||||||||||||||||||| | || | |||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  20177827 gatggaaattgggattttcgcttgaaaagtcagagtttgaacgtttttgcaaataagggattatgtgaggtttgggaaatcgatttttggg 20177737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 22158164 - 22158254
Alignment:
Q  53 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttggg 142  Q
    ||||||||||||||||||||||||||||||| | || | |||||||||||||||||| ||||||||||| ||| |||||||||||||||||    
T  22158164 gatggaaattgggattttcgcttgaaaagtcagagtttgaacgtttttgcaaataagggattatgtgaggtttgggaaatcgatttttggg 22158254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 5289300 - 5289398
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcga 156  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||||   || ||| |||| ||| || |||||||||| |||||||||||||||||| ||    
T  5289300 aaatttggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgcgaggttctggaaatcgagttttgggtggttgaaacttga 5289396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 25753288 - 25753202
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 121  Q
    ||||||||||||| | || |||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||    
T  25753288 cagttttggggtt-gagttgatgaagattaggattttcgttcgaaaagttggtgtctaaacgtttttgcaaataagggattatgtgag 25753202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 25755458 - 25755372
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 121  Q
    ||||||||||||| | || |||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||| |||||||||||    
T  25755458 cagttttggggtt-gagttgatgaagattaggattttcgttcgaaaagttggtgtctaaacgtttttgcaaataagggattatgtgag 25755372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 302 - 420
Target Start/End: Original strand, 6115306 - 6115424
Alignment:
Q  302 ttacgcgcattgaatttgtcccgttcatctttaaagatgtttccatatttaattggtaaattgaagcatttaagatatctcgacttatcatggtgtgtaa 401  Q
    ||||| || ||||||||||||| ||| ||| | | |||||||||| ||||||||||| | |||   | |||||||||||| |||||||| |||||  |||    
T  6115306 ttacgtgcgttgaatttgtcccattcttctcttaggatgtttccagatttaattggtcagttggtacgtttaagatatcttgacttatcttggtgcataa 6115405  T
Q  402 aactagcaagacttcccaa 420  Q
    |||||||||| ||||||||    
T  6115406 aactagcaaggcttcccaa 6115424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 158
Target Start/End: Complemental strand, 19174991 - 19174895
Alignment:
Q  63 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcgaat 158  Q
    |||||||||| |||| |||||||||| ||| || ||||||||||||| |||||||||| | ||||||||  |||||| || || |||||||| ||||    
T  19174991 gggattttcgtttgagaagtcggtgtttaagcgcttttgcaaataagcgattatgtgaggttttggaaaatgattttgggatgcttgaaacttgaat 19174895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 25348170 - 25348115
Alignment:
Q  72 gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||| |||| ||||||||||| |||||||||||||| |||||||| |||||    
T  25348170 gcttgaaaattcggagtctaaacgttcttgcaaataagagactatgtgagttttgg 25348115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 16136115 - 16136057
Alignment:
Q  63 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 121  Q
    ||||||||||  ||| |||||||||| ||| | |||||||||||||| |||||||||||    
T  16136115 gggattttcgtgtgagaagtcggtgtttaagcatttttgcaaataagcgattatgtgag 16136057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 22583838 - 22583981
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  22583838 cacatactaagtttccaatcagttttggggtttgggttgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggatt 22583937  T
Q  115 atgtgagatttggaaatcgatttttgggtggttgaaactcgaat 158  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  22583938 atgtgaggtttggaaatcgatttttgggtggttgaaacttgaat 22583981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 23889673 - 23889525
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  23889673 cacaaactaagtttccaatcagttttggggtttgggttgatggaaattgagattttcgcttgaaaaatcggtgtctaaacgtttttgcaaataagggatt 23889574  T
Q  115 atgtgagatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| |||||||||||| |||||||||||||||||| |||| |||||    
T  23889573 atgtgaggtttggaaatcga-ttttgggtggttgaaacttgaatttttct 23889525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 24496474 - 24496322
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  24496474 cacagactaagtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatt 24496376  T
Q  115 atgtgagatttg-gaaatcga---tttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| |||| ||||||||   ||||| ||||||||||||| |||| |||||    
T  24496375 atgtgaggtttgtgaaatcgattttttttaggtggttgaaacttgaatttttct 24496322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 24979982 - 24979836
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||||| ||||||| ||||||||| ||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  24979982 agactaagtttccaatcagtattggggttttggttgatggaaattgggattttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagagattatg 24979884  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||| ||| ||||||| |||||||||||||||||||| |||| |||||    
T  24979883 tgaggtttgggaaatcaatttttgggtggttgaaacttgaatttttct 24979836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 163
Target Start/End: Complemental strand, 34302419 - 34302270
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| |||||||||| ||||||| |||||||||| | |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  34302419 cacatactaagtttccaatcagtattggggtttgagccgatggaa-ttgggattttcgtttgaaaagtcggtgtctaaacgtttt-gcaaataagagatt 34302322  T
Q  115 atgtgagatttggaaatcgat---ttttgggtggttgaaactcgaatctttc 163  Q
    ||||||| |||||||||||||   |||||||||||||||||| |||| ||||    
T  34302321 atgtgaggtttggaaatcgattttttttgggtggttgaaacttgaatttttc 34302270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 23451343 - 23451191
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||||| |||||||| ||||||| |||||||||| | ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||    
T  23451343 cacagattaagtttccaatcagtattggggtttgagccgatggaaattgggattttagtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatt 23451245  T
Q  115 atgtgagatttgg-aaatcga---tttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||| |||||||   ||||||||||||||||||| |||| |||||    
T  23451244 atgtgaggtttggaaaatcgattttttttgggtggttgaaacttgaatttttct 23451191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 50 - 162
Target Start/End: Original strand, 17611504 - 17611616
Alignment:
Q  50 gtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttgggtggttg 148  Q
    ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  17611504 gtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatgtgaggtttgggaaatcgatttttgggtggttg 17611602  T
Q  149 aaactcgaatcttt 162  Q
    ||||| ||||||||    
T  17611603 aaacttgaatcttt 17611616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 32950773 - 32950645
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||| | ||||||||||||||||||||| ||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| ||||||||    
T  32950773 cacagactaagttcccaatcagttttggggtttgggttgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagatt 32950674  T
Q  115 atgtgagattt-ggaaatcgatttttggg 142  Q
    ||||||| ||| |||||||||||||||||    
T  32950673 atgtgaggtttgggaaatcgatttttggg 32950645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 158
Target Start/End: Complemental strand, 3273739 - 3273613
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 133  Q
    ||||||||||||| |||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| |||||||||||    
T  3273739 cagttttggggtt-gggttgatgaaaattgggattttcgcttgaaaagttggtgtctaaacgtttttgcaaataagggagtatgtgaggtttggaaatcg 3273641  T
Q  134 at---ttttgggtggttgaaactcgaat 158  Q
    ||   |||||||||||||||||| ||||    
T  3273640 attttttttgggtggttgaaacttgaat 3273613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 26220405 - 26220282
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  26220405 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 26220306  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    | | ||||||||||||||||||||    
T  26220305 accaatttttgggtggttgaaact 26220282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 22532331 - 22532426
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  22532331 aatcagttttggggtt-gggttgatgaaaattgggattttcgctagaagagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 22532426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 22537016 - 22537111
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||| |||| |||| ||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| |||||    
T  22537016 aatcagttttggggtt-gggttgatgaaaattgggattttcgctagaagagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 22537111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 39694476 - 39694572
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||| ||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||    
T  39694476 aatcaattttggggtttgggttgatgaaagttgagattttcgcttgaaaagtcggtgtctaaacatttttgcaaataagggattatgtgaggtttgg 39694572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 44522402 - 44522470
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  44522402 aaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 44522470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 26222538 - 26222603
Alignment:
Q  89 ctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttgggtggttgaaact 153  Q
    ||||| |||||||||||| || ||||||||||| ||| ||||| | ||||||||||||||||||||    
T  26222538 ctaaatgtttttgcaaatgagtgattatgtgaggttttggaaaccaatttttgggtggttgaaact 26222603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 39364587 - 39364532
Alignment:
Q  72 gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||| |||| |||||||||||  ||||||||||||| |||||||| |||||    
T  39364587 gcttgaaaattcggagtctaaacgttcatgcaaataagagactatgtgagttttgg 39364532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 7549 - 7399
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  7549 cacacactaagtttccaatcagttttagggtttgggtcgatggaaattggaatttacgcttgaaaagtcggagtctaaacgtttttgcaaataagagatt 7450  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  7449 atgtgaggtttgggaaatcgatttttgggtggttgaaacttgaatttttct 7399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 3e-52; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 21473661 - 21473514
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  21473661 cacagactaagtttccaatcagtattggggtttgagtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagatt 21473563  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  21473562 atgtgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 21473514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 52984096 - 52983946
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| |||||||||| ||||||||||||||| |||||||||||||||||| |||| | ||||||||||||| ||||||||||||||||||||||||||||    
T  52984096 cacaaactaagtttccaatcagttttggggtatgggtcgatggaaattggaatttacacttgaaaagtcggagtctaaacgtttttgcaaataagagatt 52983997  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  52983996 atgtgaggtttgggaaatcgatttttgggtggttgaaacttgaatatttct 52983946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 18824489 - 18824340
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||| | ||||||||||||||||||    
T  18824489 cacagactaagtttccaatcagtattggggtttgagtcgatggaaattgagattttcgtttgaaaagtcggtgtctaaa-ggttttgcaaataagagatt 18824391  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| ||||||| |||||| ||||||||||||| |||| |||||    
T  18824390 atgtgaggtttgggaaatcaatttttaggtggttgaaacttgaatttttct 18824340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 18271191 - 18271047
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||| ||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  18271191 agactacgtttccaataagtattggggtttgggttgatggaaattgggattttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagagattatg 18271093  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  18271092 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 18271047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 18275845 - 18275701
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||| ||||| ||| ||| ||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  18275845 agactacgtttccaataagtattggggtttgggttgatggaaattgggattttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagagattatg 18275747  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  18275746 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 18275701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 51476842 - 51476711
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 133  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||| |||||||||||    
T  51476842 cagttttggggtt-gggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgtaaataagggattgtgtgaggtttggaaatcg 51476744  T
Q  134 at--ttttgggtggttgaaactcgaatctttct 164  Q
    ||  |||||||||||||||||| |||| |||||    
T  51476743 atttttttgggtggttgaaacttgaatttttct 51476711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 13527910 - 13528041
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||| | |||||||    
T  13527910 aatcagttttggggtt-gggttaatggaaattgggattttcccttgaaaagtcggtgtctaaacg--tttgcaaataagcgattatgtgaggttttggaa 13528006  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  13528007 atcgatttttgggtggttgaaacttgaatttttct 13528041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 30 - 158
Target Start/End: Original strand, 7320792 - 7320920
Alignment:
Q  30 gaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tgga 128  Q
    ||||||||||| ||||||| || |||| |||||| ||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||    
T  7320792 gaatcagttttagggtttgagttgatgaaaattgtgattt-cgcttgaaaagtcggtgtataaacgtttttgcaaataagtgattatgtgaggttctgga 7320890  T
Q  129 aatcgatttttgggtggttgaaactcgaat 158  Q
    ||||||||||||||||||| ||||| ||||    
T  7320891 aatcgatttttgggtggttaaaacttgaat 7320920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 51324357 - 51324262
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  51324357 aatcagttttggggtt-gggttgatgaaaattgggattttcgcttcaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 51324262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 20058310 - 20058215
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaact 153  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||  |||||||||| || |||||| ||||||||||||||||||||||    
T  20058310 aaattgggattttcgcttgaaaagttggtgtctaaacg-ttttgcaaataagtaattatgtgaggttctggaaaccgatttttgggtggttgaaact 20058215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 21660239 - 21660111
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgg-gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    ||||||||| | ||||||||||||||||||||||||||||||||||  ||||  | ||||| |||||| ||||||||||||||| ||| |||||||||||    
T  21660239 gactaagttcccaatcagttttggggtttgggtcgatggaaattggaaatttatgtttgaagagtcggagtctaaacgtttttgaaaaaaagagattatg 21660140  T
Q  118 tgagattt-ggaaatcgatttttgggtgg 145  Q
    |||| ||| || |||||||||| ||||||    
T  21660139 tgaggtttggggaatcgattttggggtgg 21660111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 45 - 126
Target Start/End: Original strand, 21239257 - 21239338
Alignment:
Q  45 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg 126  Q
    ||||||| |||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||| ||||    
T  21239257 tttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtcaaaacgattttgcaaataagggattatgtgaggtttg 21239338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 7791756 - 7791850
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||| ||||  ||| ||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  7791756 aatcagttttggggtt-gggttaatgaaaattgggactttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 7791850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 20030866 - 20030934
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  20030866 aaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgaggtttgg 20030934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 104; Significance: 1e-51; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 26000 - 25854
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||| | |||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  26000 agactaagttcc-aatcagttttggggtttgggtcgatggaaattggaatttacgcttgaaaagtcggagtctaaacgtttttgcaaataagagattatg 25902  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  25901 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatttttct 25854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 40412 - 40540
Alignment:
Q  35 agttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcg 133  Q
    |||||| |||||||||| |||| ||||||||||||||||||||  |||| |||||||||||||| |||||||||| |||||||||| | |||||||||||    
T  40412 agtttttgggtttgggttgatgaaaattgggattttcgcttgagtagtcagtgtctaaacgtttatgcaaataagtgattatgtgaggttttggaaatcg 40511  T
Q  134 atttttgggtggttgaaactcgaatcttt 162  Q
    |||||||||||||||||||| ||||||||    
T  40512 atttttgggtggttgaaacttgaatcttt 40540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 24340125 - 24340272
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||||||||    
T  24340125 cacagactaagtttccaatcagtattggggtttgagtcgatggaaattgggatttttgtttgaatagtcggtgtctaaacg-ttttgcaaataagagatt 24340223  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||    
T  24340224 atgtgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 24340272  T

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Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 14818954 - 14818806
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||  |||||||||||||| ||||||| ||||||||||||||||||||    
T  14818954 cacagactaagttcccaatcaattttggggtttgggtcgatggaaattggaatttatgcttgaaaagtcggagtctaaatgtttttgcaaataagagatt 14818855  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| |||||| |||||| |||||||||||||| ||||||||    
T  14818854 atgtgaggtttgggaaatagattttggggtggttgaaacttgaatcttt 14818806  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 52212610 - 52212760
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| ||| |||||| ||||| ||||||||||| |||||||||||||||| |||| ||||||||||||||| || ||||| |||||||||||||||||||    
T  52212610 cacaaacttagtttccaatcaattttggggttttggtcgatggaaattggaatttacgcttgaaaagtcggagtgtaaacatttttgcaaataagagatt 52212709  T
Q  115 atgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||| | || ||||||||||||| |||||||||||||| ||||||||||    
T  52212710 atgtgaggcttgggaaatcgattttggggtggttgaaacttgaatctttct 52212760  T

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Target: chr3; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 158
Target Start/End: Original strand, 52338133 - 52338276
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  52338133 cacagactaagtttcaaatcagtattggggtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgatt 52338231  T
Q  115 atgtga-gatttggaaatcgatttttgggtggttgaaactcgaat 158  Q
     ||||| | |||||| ||||||||||||| |||| ||||| ||||    
T  52338232 gtgtgaggttttggagatcgatttttgggcggttaaaacttgaat 52338276  T

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Target: chr3; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 26 - 164
Target Start/End: Complemental strand, 12536511 - 12536372
Alignment:
Q  26 tttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt- 124  Q
    |||| |||||||||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||     
T  12536511 tttccaatcagtttttgggtttggcttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttc 12536412  T
Q  125 tggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||| | |||||||| ||||||||||| |||| |||||    
T  12536411 tggaaaccaatttttggatggttgaaacttgaatttttct 12536372  T

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Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 12159155 - 12159001
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||| ||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  12159155 cacagactaggtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatt 12159057  T
Q  115 atgtgagattt-ggaaatcga-----tttttgggtggttgaaactcgaatctttct 164  Q
    || |||| ||| |||||||||     ||||||||||||||||||| |||| |||||    
T  12159056 atctgaggtttgggaaatcgattttttttttgggtggttgaaacttgaatttttct 12159001  T

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Target: chr3; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 13511937 - 13511785
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||     
T  13511937 cacagactaagtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagcgata 13511839  T
Q  115 atgtgagattt-ggaaatcga---tttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||| ||   ||||||||||||||||||| |||| |||||    
T  13511838 atgtgaggtttgggaaatagattttttttgggtggttgaaacttgaatttttct 13511785  T

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Target: chr3; HSP #8
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 37641696 - 37641827
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatc 132  Q
    ||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| | |||||||| |    
T  37641696 cagtttttgggtttgggttgatgaaaattgggattttcgcttgaatagtcggtgtctaaacgtttatgcaaataagtgattatgtgaggttttggaaacc 37641795  T
Q  133 gatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||||||||||| ||||| |||| |||||    
T  37641796 gatttttgggtggtttaaacttgaatttttct 37641827  T

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Target: chr3; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 17547667 - 17547798
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||||||||| ||||  |||||||||||||||||| ||||||||||| |||||||||||  |||||||||||| |||||||||| | |||||||    
T  17547667 aatcagttttggggtt-gggttaatggaaattgggattttcccttgaaaagtcagtgtctaaacg--tttgcaaataagcgattatgtgaggttttggaa 17547763  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  17547764 atcgatttttgggtggttgaaacttgaatttttct 17547798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 36167384 - 36167250
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| ||||| |||||| || |||||||||| | |||||||    
T  36167384 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgttttggcaaatgagtgattatgtgaggttttggaa 36167285  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    | |||||||||||||||||||||| ||||||||||    
T  36167284 accgatttttgggtggttgaaactggaatctttct 36167250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 9511115 - 9511204
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 120  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9511115 aatcagttttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaaggattatgtga 9511204  T

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Target: chr3; HSP #12
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 9519090 - 9519179
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 120  Q
    ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9519090 aatcagttttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaaggattatgtga 9519179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 3393937 - 3394057
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||| |||||||||||||||||||||||||||| ||||  |||||||||||| | ||||||||||||||||||| ||||||||||||    
T  3393937 gactaagttcccaatcaattttggggtttgggtcgatggaaattggaatttatgcttgaaaagtcagagtctaaacgtttttgcaaacaagagattatgt 3394036  T
Q  119 gagattt-ggaaatcgatttt 138  Q
    ||| ||| |||||||||||||    
T  3394037 gaggtttgggaaatcgatttt 3394057  T

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Target: chr3; HSP #14
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 10551157 - 10551034
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  10551157 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 10551058  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    | ||||||||||||||||||||||    
T  10551057 accgatttttgggtggttgaaact 10551034  T

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Target: chr3; HSP #15
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 19 - 149
Target Start/End: Complemental strand, 12276664 - 12276533
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||||||||||||||||||||||||||| |||| | ||  ||||||||| |||| ||||||||||||||||||| |||||||||| |    
T  12276664 gactaagttcccaatcagttttggggtttgggtcgatggaagttggaaattatgcttgaaaaatcggagtctaaacgtttttgcaaacaagagattatct 12276565  T
Q  119 gagattt-ggaaatcgatttttgggtggttga 149  Q
    ||| ||| ||||||||||||| ||||||||||    
T  12276564 gaggtttgggaaatcgattttggggtggttga 12276533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 164
Target Start/End: Original strand, 45530807 - 45530937
Alignment:
Q  36 gttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcga- 134  Q
    ||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||| |     
T  45530807 gttttggggtt-gggttgatgaaaattaggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataggggattatgtgaggtttggaaatcaat 45530905  T
Q  135 --tttttgggtggttgaaactcgaatctttct 164  Q
      |||||||||||||| |||| |||| |||||    
T  45530906 tttttttgggtggttggaacttgaatttttct 45530937  T

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Target: chr3; HSP #17
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 13667308 - 13667414
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaaatcgatttttgggtggttgaaactcga 156  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||| ||||||||||||| ||    
T  13667308 aaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagagattatgcgaggtttgggaaatcgatttttaggtggttgaaacttga 13667406  T
Q  157 atctttct 164  Q
     |||||||    
T  13667407 gtctttct 13667414  T

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Target: chr3; HSP #18
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 29172050 - 29172181
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaa 129  Q
    ||||| |||||||||| ||||  ||| |||||||||||||| ||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||| ||||    
T  29172050 aatcaattttggggtt-gggttaatgaaaattgggattttcccttgaaa-gtcggtgtctaaacgtttt-gcaaataagcgattatgtgaggttttggaa 29172146  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  29172147 atcgatttttgggtggttgaaacttgaatttttct 29172181  T

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Target: chr3; HSP #19
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 178664 - 178773
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    ||||||||| | |||||||||||||||||||||||||||||||||| | |||  | ||||| |||||| |||||||||||||||||||||||||||||||    
T  178664 gactaagttcccaatcagttttggggtttgggtcgatggaaattggaaatttatgtttgaagagtcggagtctaaacgtttttgcaaataagagattatg 178763  T
Q  118 tgagatttgg 127  Q
    |||| |||||    
T  178764 tgaggtttgg 178773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 15 - 138
Target Start/End: Original strand, 18366693 - 18366817
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||| | |||||||| ||| |||||||||||||||| |||| ||||  | |||||||||||| ||||||||||||||||||| | ||||||    
T  18366693 cacagactaagttcccaatcagttatggagtttgggtcgatggaagttggaatttatgattgaaaagtcggagtctaaacgtttttgcaaacatgagatt 18366792  T
Q  115 atgtgagattt-ggaaatcgatttt 138  Q
    ||||||| ||| |||||||||||||    
T  18366793 atgtgaggtttgggaaatcgatttt 18366817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 34851498 - 34851619
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||||||||| ||||  ||| |||||||||||||| |||||| ||||||||| |||||| ||||||||||||| |||||||||| | |||||||    
T  34851498 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaagagtcggtgtataaacg-ttttgcaaataagtgattatgtgaggttttggaa 34851595  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    |||||| |||||||||||||||||    
T  34851596 atcgatatttgggtggttgaaact 34851619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 121
Target Start/End: Complemental strand, 37038898 - 37038812
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 121  Q
    ||||||||||||| | || |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37038898 cagttttggggtt-gagttgatgaaaattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgag 37038812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 13029357 - 13029452
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||||||||| |||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||||||||| |||||    
T  13029357 aatcagttttggggtttgggtcaatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttgg 13029452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 21619235 - 21619112
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||| | |||| |||||| |||||| ||||||| || ||||||||||| ||||| |||||| || |||||||||| | |||||||    
T  21619235 aatcagtttttgagtttggattgatgaaaattgagatttttgcttgaagagacggtgtctaaatgttttggcaaatgagggattatgtgaggttttggaa 21619136  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    | ||||||||||||||||||||||    
T  21619135 accgatttttgggtggttgaaact 21619112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 42 - 164
Target Start/End: Original strand, 22146967 - 22147089
Alignment:
Q  42 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttg 140  Q
    |||||||||| |||| ||| ||| ||||||||||||| | |||||||||||| | ||||||||||||| |||||||||| | |||||||| |||||||||    
T  22146967 gggtttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaatg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttg 22147065  T
Q  141 ggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||| |||| |||||    
T  22147066 ggtggtttaaacttgaatttttct 22147089  T

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Target: chr3; HSP #26
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 105
Target Start/End: Original strand, 19568407 - 19568480
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaa 105  Q
    ||||| |||||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19568407 aatcaattttggggtt-gggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaa 19568480  T

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Target: chr3; HSP #27
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 11849819 - 11849923
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcga 156  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||| ||| || |||||||||| |||||||||||||||||| ||    
T  11849819 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgcgaggttctggaaatcgagttttgggtggttgaaacttga 11849915  T
Q  157 atctttct 164  Q
    || |||||    
T  11849916 atttttct 11849923  T

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Target: chr3; HSP #28
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 13025765 - 13025860
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||||||||| |||||||||||  |||||| |||||||||||  || |||||| |||||||||||||||||||| |||| |||||    
T  13025765 aatcagttttggggtttgggtcaatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatttgaggtttgg 13025860  T

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Target: chr3; HSP #29
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 15517473 - 15517374
Alignment:
Q  65 gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctttc 163  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||| | |||| |||| ||||||||||| ||||||||| |||| ||||    
T  15517473 gattttcgcttgaaaagtcagtgtctaaacg-ttttgcaaataagtgattatgtgaggttttgaaaattgatttttgggtagttgaaacttgaatttttc 15517375  T

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Target: chr3; HSP #30
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 17513682 - 17513588
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||| |||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||| |||||    
T  17513682 aatcaattttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagagactatgtgagttttgg 17513588  T

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Target: chr3; HSP #31
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 126
Target Start/End: Original strand, 42324199 - 42324265
Alignment:
Q  60 attgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg 126  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||    
T  42324199 attgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataaggaattatgtgaggtttg 42324265  T

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Target: chr3; HSP #32
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 20188552 - 20188461
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||||||| || |||||||||| ||| ||||||||||||    
T  20188552 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgtgaggttctggaaatcgagtttggggtggttgaaa 20188461  T

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Target: scaffold0453 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 3986 - 3836
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| |||||||||||||||||||| | ||||||||||| ||||  |||||||||||||| |||| |||||||||||||||||||||||    
T  3986 cacagactaagtttccaatcagttttggggtttgggccaatggaaattggaatttatgcttgaaaagtcggagtctgaacgtttttgcaaataagagatt 3887  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| ||||||||||||| |||||||||||||| ||||||||||    
T  3886 atgtgaggtttgggaaatcgattttggggtggttgaaacttgaatctttct 3836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 8952219 - 8952368
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  8952219 cacagactaagtttccaatcagtattggagtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatt 8952317  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||||||| ||||||||||||| |||| |||||    
T  8952318 atgtgaggtttgggaaatcgatttttaggtggttgaaacttgaatttttct 8952368  T

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Target: chr5; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 22777251 - 22777397
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||||||||| ||||||| | |||||||||||| |||||||||||||||||||||    
T  22777251 agactaagtttccaatcagtattggggtttgggttgatggaaattgggattttcgtttgaaaaataggtgtctaaacg-ttttgcaaataagagattatg 22777349  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||| ||| ||||||||||||||||| |||||||||| ||||||||||    
T  22777350 tgaggtttgggaaatcgatttttgggcggttgaaacttgaatctttct 22777397  T

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Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 22357085 - 22357231
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||||| ||||| | ||||||||||||| ||||||||||||||| |||| ||||||| |||||||||||||| ||||||||||||| |||||||    
T  22357085 agactaagtttccaatcattattggggtttgggttgatggaaattgggatcttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagtgattatg 22357183  T
Q  118 tgagatt-tggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||| || ||||||||||||||||||||||||||||| |||| |||||    
T  22357184 tgaggttctggaaatcgatttttgggtggttgaaacttgaatttttct 22357231  T

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Target: chr5; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 10817678 - 10817531
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattggga-ttttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattat 116  Q
    |||||||||||| ||||||| |||||||||||||  ||||||||| ||| |||||| ||||||| |||| ||||||||| |||||||||||||  |||||    
T  10817678 agactaagtttccaatcagtattggggtttgggtttatggaaatttggatttttcgtttgaaaaatcggcgtctaaacg-ttttgcaaataagtaattat 10817580  T
Q  117 gtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
     |||| || ||||||||||||||||||||||||||||| |||| |||||    
T  10817579 atgaggttctggaaatcgatttttgggtggttgaaacttgaatttttct 10817531  T

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Target: chr5; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 63 - 153
Target Start/End: Original strand, 21297585 - 21297676
Alignment:
Q  63 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaact 153  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| |||||||| || || |||||||||||||||||||||||||||||    
T  21297585 gggattttcgcttgaaaagtcgctgtctaaacgtttttgcaaataagtgattatgtaaggttctggaaatcgatttttgggtggttgaaact 21297676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 18318396 - 18318534
Alignment:
Q  26 tttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatt 124  Q
    |||| |||||||||| | |||||||| |||  ||||| |||||||||||| || ||||||||||||||  ||||||||||| || |||||||||| | ||    
T  18318396 tttctaatcagtttttgagtttgggttgataaaaattaggattttcgcttaaagagtcggtgtctaaatatttttgcaaatgagtgattatgtgaggttt 18318495  T
Q  125 tggaaatcgatttttgggtggttgaaactcgaatctttc 163  Q
    |||||| |||||||||||||||||||||| |||| ||||    
T  18318496 tggaaaccgatttttgggtggttgaaactggaatttttc 18318534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 21311130 - 21311219
Alignment:
Q  65 gattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaact 153  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||    
T  21311130 gattttcacttgaaaagtcggtgtctaaaagtttttgcaaataagtgattatgtgaggttctggaaatcgatttttgggtggtcgaaact 21311219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 58 - 138
Target Start/End: Original strand, 21405854 - 21405935
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttt 138  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||    
T  21405854 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggttctgaaaatcgatttt 21405935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 22470699 - 22470588
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||||| |||||| | ||||||||||||||| ||||||||||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||    
T  22470699 cacagattaagttcccaatcagttttggggtatgggtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagatt 22470601  T
Q  115 atgtgagatttgg 127  Q
    ||||||| |||||    
T  22470600 atgtgaggtttgg 22470588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 42 - 164
Target Start/End: Complemental strand, 40726533 - 40726411
Alignment:
Q  42 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttg 140  Q
    |||||||||| |||| ||| ||| ||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| | |||||||| |||||||||    
T  40726533 gggtttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttg 40726435  T
Q  141 ggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||| |||| |||||    
T  40726434 ggtggtttaaacttgaatttttct 40726411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 58 - 164
Target Start/End: Original strand, 20765478 - 20765584
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcga 156  Q
    |||||| |||||||||||||| |||||||||||||| | |||||||||| || |||||||||| | |||||||| | |||||||||||||||||||| ||    
T  20765478 aaattgagattttcgcttgaagagtcggtgtctaaatg-ttttgcaaatgagtgattatgtgaggttttggaaacctatttttgggtggttgaaactgga 20765576  T
Q  157 atctttct 164  Q
    || |||||    
T  20765577 atttttct 20765584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 15 - 99
Target Start/End: Original strand, 21663321 - 21663405
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttt 99  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||| ||||  | ||||||||| || |||||||||||||    
T  21663321 cacagactaagttcccaaccagttttggggtttgggtcgatggaaattggaatttatgtttgaaaagttggagtctaaacgtttt 21663405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 158
Target Start/End: Complemental strand, 23539618 - 23539493
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  23539618 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 23539522  T
Q  130 atcgatttttgggtggttgaaactcgaat 158  Q
    ||| |||||||||||||||||||| ||||    
T  23539521 atcaatttttgggtggttgaaacttgaat 23539493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 141
Target Start/End: Original strand, 22007085 - 22007194
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    ||||| |||||||||| ||||| ||| ||||||||| |||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  22007085 aatcaattttggggtt-gggtcaatgaaaattgggactttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 22007181  T
Q  129 aatcgatttttgg 141  Q
    |||||||||||||    
T  22007182 aatcgatttttgg 22007194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0181 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 25699 - 25849
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||  |||||||||||||  ||||||||||||||||||||||||||||    
T  25699 cacagactaagtttccaattagttttggggtttgggtcgatggaaattggaaattatgcttgaaaagtcgaagtctaaacgtttttgcaaataagagatt 25798  T
Q  115 atgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||| | ||||||||||||||||| ||||||||||||| |||| |||||    
T  25799 atgtgaggttttggaaatcgattttttggtggttgaaacttgaatttttct 25849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 113166 - 113300
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    ||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | |||||    
T  113166 aatcagtttcggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgatgttctggaa 113265  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  113266 atcgatttttgggtggttgaaacttgaatttttct 113300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 41 - 164
Target Start/End: Original strand, 118010 - 118134
Alignment:
Q  41 ggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgattttt 139  Q
    ||||||||||| |||| |||||| |||||||||||||| | |||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||    
T  118010 ggggtttgggttgatgaaaattgagattttcgcttgaagactcggtgtctaaacgtttttgcaaataagtgattatgtgaggttttggaaatcgattttt 118109  T
Q  140 gggtggttgaaactcgaatctttct 164  Q
    |||||||||||||| |||| |||||    
T  118110 gggtggttgaaacttgaatttttct 118134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 60294 - 60150
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||||| ||||||| || |||||||||| |||||||||||||||||||| ||||||| |||||| ||||||| |||||||||||||||||||||    
T  60294 agactaagtttccaatcagtattcgggtttgggttgatggaaattgggattttcgtttgaaaaatcggtgactaaacg-ttttgcaaataagagattatg 60196  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||    
T  60195 tgaggtttgggaaatcgatttttgggtggttgaaacttgaatcttt 60150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 75645 - 75511
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    ||||||||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  75645 aatcagttttggggtttgggttgatgaaaatttggatttttgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaa 75546  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    | |||||||||||||||||||||| |||| |||||    
T  75545 accgatttttgggtggttgaaacttgaatttttct 75511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 72797 - 72675
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||| |||||||| ||||  |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||    
T  72797 aatcagttttggcgtttgggttgatgataattgg-attttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagtgattatgtgaggttctggaa 72699  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    | ||||||||||||||||||||||    
T  72698 accgatttttgggtggttgaaact 72675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 16224249 - 16224102
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||| ||||||||||||    
T  16224249 cacagactaagtttccaatcagtataggggtttgagtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttggaaataagagatt 16224151  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| ||||||||| |||||||||||||||||| ||||||||    
T  16224150 atgtgaggtttgggaaatcgagttttgggtggttgaaacttgaatcttt 16224102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 6512493 - 6512344
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||| || |||| ||||||| ||||||||||||| |||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||    
T  6512493 cacagacaaaatttccaatcagtattggggtttgggttgatgaaaattgggattttcgtttgaaaaatcggtgtctaaacg-ttttgcaaataagagatt 6512395  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||||||||||||||||||||| |||| |||||    
T  6512394 atgtgaggtttgggaaatcgatttttgggtggttgaaacttgaatttttct 6512344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 14931305 - 14931454
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||  ||   |||||||||||||| ||||||||| ||||||||||||||||||    
T  14931305 cacagactaagtttccaatcaattttggggtttgggtcgatggaaattggagttgatgcttgaaaagtcggagtctaaacg-ttttgcaaataagagatt 14931403  T
Q  115 atgtgagatttgg-aaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||| |||||||||||||||||||||||||| |||| |||||    
T  14931404 atgtgaggtttggaaaatcgatttttgggtggttgaaacttgaatttttct 14931454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 15374198 - 15374054
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    |||||||||||| ||||||| | |||||||| ||| ||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||    
T  15374198 agactaagtttccaatcagtataggggtttgagtcaatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagattatg 15374100  T
Q  118 tgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    |||| ||| ||||||| |||||||||||||||||||| ||||||||    
T  15374099 tgaggtttgggaaatcaatttttgggtggttgaaacttgaatcttt 15374054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 15368400 - 15368253
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| | |||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||| |||||||||||||| |||    
T  15368400 cacagactaagtttccaatcagtataggggtttgagtcgatggaaattgggattttcgattgaatagtcggcgtctaaacg-ttttgcaaataagaaatt 15368302  T
Q  115 atgtgagatttgg-aaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||||| || ||||||||||||||||||||||| ||||||||    
T  15368301 atgtgaggtttggcaagtcgatttttgggtggttgaaacttgaatcttt 15368253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 20898928 - 20899077
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  20898928 cacagactaagtttccaatcagtattggggtttgagtcgatggaaattgagattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgatt 20899026  T
Q  115 atgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
     ||||| | |||||| ||||||||||||||||||||| || |||| |||||    
T  20899027 gtgtgaggttttggagatcgatttttgggtggttgaagcttgaatttttct 20899077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 15 - 162
Target Start/End: Complemental strand, 15371909 - 15371761
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |  ||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  15371909 cacagactaagtttccaatcagtataagggtttgagtcgatggaaattgggattttcgtttgaatagtcggtgtctaaacg-ttttgcaaataagagatt 15371811  T
Q  115 atgtgagattt-ggaaatcga-tttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| ||||||||| ||||||||| ||||||||| ||||||||    
T  15371810 atgtgaggtttgggaaatcgattttttgggtagttgaaacttgaatcttt 15371761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 31 - 153
Target Start/End: Complemental strand, 14281103 - 14280980
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || |||||||||| | |||||||    
T  14281103 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcaaatgagtgattatgtgaggttttggaa 14281004  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    | ||||||||||||||||||||||    
T  14281003 accgatttttgggtggttgaaact 14280980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 18230587 - 18230461
Alignment:
Q  38 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatt 136  Q
    |||||| |||| || |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| || ||||||| ||||    
T  18230587 tttgggatttgtgttgatgaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaattgatt 18230489  T
Q  137 tttgggtggttgaaactcgaatctttct 164  Q
    ||||||||||||||||| |||| |||||    
T  18230488 tttgggtggttgaaacttgaatttttct 18230461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 54798103 - 54798237
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||| | |||||  | |||| ||||||||||||||||||||| |||||||||||||| ||||||||| || |  |||||||||| | |||||||    
T  54798103 aatcagtttttgagtttgaattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttgcatatgactgattatgtgaggttttggaa 54798202  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    | |||||||||||||||||||||| |||| |||||    
T  54798203 accgatttttgggtggttgaaactggaatttttct 54798237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 3338240 - 3338129
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||||| | | |||||||  ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||| || |    
T  3338240 cacagactaagtttccaatcagttt-gagatttgggttcatgaaaattgggattttcgcttgaaaagtcggtgtctaaacattcttgcaaataagggact 3338142  T
Q  115 atgtgagatttgg 127  Q
    ||||||| |||||    
T  3338141 atgtgaggtttgg 3338129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 9870648 - 9870740
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||| | | |||| |||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| |||||    
T  9870648 cagttttggggtttagtt-gatgaaaattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaagtaagggattatgtgaggtttgg 9870740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 45 - 164
Target Start/End: Complemental strand, 22354518 - 22354399
Alignment:
Q  45 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggt 143  Q
    ||||||| |||| ||| ||| ||||||||||||| | |||||||||||||| ||||||||||||| |||||||||| | |||||||| ||||||||||||    
T  22354518 tttgggttgatgaaaactggaattttcgcttgaagattcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaaccgatttttgggt 22354420  T
Q  144 ggttgaaactcgaatctttct 164  Q
    |||| ||||| |||| |||||    
T  22354419 ggtttaaacttgaatttttct 22354399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 10705587 - 10705468
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaa 129  Q
    |||||||||||| |||||||||||||||||||||  |||  |||||||||||| | | |||||||||||| |||| ||||||||||| ||| ||| ||||    
T  10705587 aatcagttttggagtttgggtcgatggaaattggagtttatgcttgaaaagtcagaggctaaacgtttttccaaacaagagattatgggaggtttgggaa 10705488  T
Q  130 atcgatttttgggtggttga 149  Q
    ||||||||| | ||||||||    
T  10705487 atcgattttggagtggttga 10705468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 10919357 - 10919238
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-ggaa 129  Q
    |||||||||||| |||||||||||||||||||||  |||  |||||||||||| | | |||||||||||| |||| ||||||||||| ||| ||| ||||    
T  10919357 aatcagttttggagtttgggtcgatggaaattggagtttatgcttgaaaagtcagaggctaaacgtttttccaaacaagagattatgggaggtttgggaa 10919258  T
Q  130 atcgatttttgggtggttga 149  Q
    ||||||||| | ||||||||    
T  10919257 atcgattttggagtggttga 10919238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 2584344 - 2584475
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  2584344 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 2584440  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  2584441 atcgatttttgggtggttgaaacttgaatttttct 2584475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 4830357 - 4830488
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  4830357 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 4830453  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||| |||||||||||||||||||| |||| |||||    
T  4830454 atcaatttttgggtggttgaaacttgaatttttct 4830488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 4833652 - 4833783
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  4833652 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 4833748  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||| |||||||||||||||||||| |||| |||||    
T  4833749 atcaatttttgggtggttgaaacttgaatttttct 4833783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 13447382 - 13447251
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg-gaa 129  Q
    |||||||||||||||| ||||  ||| |||||| ||||||| |||||| ||||| ||||||| ||||||  |||||||| ||||||||||| |||  |||    
T  13447382 aatcagttttggggtt-gggttaatgaaaattgagattttcccttgaagagtcgatgtctaa-cgtttta-caaataagcgattatgtgaggttttagaa 13447286  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  13447285 atcgatttttgggtggttgaaacttgaatttttct 13447251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 15991121 - 15991026
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||||||||| |||||| |||||||   ||||| |||||||||||  || |||||| ||||||||||||||||||||||||| |||||    
T  15991121 aatcagttttggggtttggatcgatgaaaattggaggtttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttgg 15991026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 56 - 162
Target Start/End: Complemental strand, 15403370 - 15403265
Alignment:
Q  56 ggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcgatttttgggtggttgaaactcg 155  Q
    ||||| ||||||||||| ||||| |||||| |||||||||||||  ||| ||||| |||||||||| || | || ||||||||||||||| ||||||| |    
T  15403370 ggaaaatgggattttcgattgaatagtcggcgtctaaacgttttc-caattaagaaattatgtgagtttggcaattcgatttttgggtgggtgaaacttg 15403272  T
Q  156 aatcttt 162  Q
    |||||||    
T  15403271 aatcttt 15403265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 27028598 - 27028467
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg-aa 129  Q
    |||||||||||||||| ||||  ||| ||||||||||||  | |||||| || |||||| || |||||| ||||||||| ||| ||||||| ||||| ||    
T  27028598 aatcagttttggggtt-gggttaatgaaaattgggatttatgtttgaaaggttggtgtccaa-cgtttt-gcaaataagggatcatgtgagttttgggaa 27028502  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||| |||||||||||||||||||| |||| |||||    
T  27028501 atcaatttttgggtggttgaaacttgaatttttct 27028467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 16157647 - 16157538
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    |||||||||||||||| ||||| ||| ||||||||| |||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  16157647 aatcagttttggggtt-gggtcaatgaaaattgggactttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatgatgtgagttttggga 16157551  T
Q  129 aatcgatttttgg 141  Q
    |||||||||||||    
T  16157550 aatcgatttttgg 16157538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 153
Target Start/End: Original strand, 4615319 - 4615371
Alignment:
Q  102 caaataagagattatgtgagatttgg-aaatcgatttttgggtggttgaaact 153  Q
    ||||||| |||||||||||| ||||| ||||| |||||| |||||||||||||    
T  4615319 caaataaaagattatgtgaggtttgggaaatcaatttttaggtggttgaaact 4615371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0429 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0429
Description:

Target: scaffold0429; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 2179 - 2328
Alignment:
Q  16 acagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatta 115  Q
    |||||||||||||| ||||||||||||||||||||| |||||||||||| ||||  |||||||||||||  ||||||||||||||| |||||||||||||    
T  2179 acagactaagtttccaatcagttttggggtttgggttgatggaaattggaatttatgcttgaaaagtcgaagtctaaacgtttttgaaaataagagatta 2278  T
Q  116 tgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||| ||| ||||||| |||||| ||||||||||||| |||| |||||    
T  2279 tgtgaggtttgggaaatcaatttttaggtggttgaaacttgaatttttct 2328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0377 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0377
Description:

Target: scaffold0377; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 16281 - 16432
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  16281 cacagactaagtttccaatcagtattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatt 16379  T
Q  115 atgtgagatttgg-aaatcga--tttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||||| |||||||  |||||| |||||||||||| |||| |||||    
T  16380 atgtgaggtttggaaaatcgatttttttgtgtggttgaaacttgaatttttct 16432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 11054562 - 11054431
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 133  Q
    ||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  11054562 cagttttggggtt-gggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcg 11054464  T
Q  134 at--ttttgggtggttgaaactcgaatctttct 164  Q
    ||  |||||||||||||||||| |||| |||||    
T  11054463 atttttttgggtggttgaaacttgaatttttct 11054431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 8756332 - 8756463
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||||||||||| |||||||||||||||||||  ||||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  8756332 gactaagttcccaatcagttttgggttttgggtcgatggaaattgtaatttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 8756431  T
Q  119 gagattt-ggaaatcgatttttgggtggttga 149  Q
    ||| ||| ||||||||||||| ||||||||||    
T  8756432 gaggtttgggaaatcgattttggggtggttga 8756463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 40554700 - 40554831
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||||||||||||||||||| |||||||||||| ||||  |||||||||||||| || |||||||||||||||| ||||||||||||    
T  40554700 gactaagttcccaatcagttttggggtttgggttgatggaaattggaatttatgcttgaaaagtcggagtttaaacgtttttgcaaacaagagattatgt 40554799  T
Q  119 gagattt-ggaaatcgatttttgggtggttga 149  Q
    ||| ||| ||||||||||||| ||||||||||    
T  40554800 gaggtttgggaaatcgattttggggtggttga 40554831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 13256539 - 13256413
Alignment:
Q  38 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatt 136  Q
    |||||| ||||||| |||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||| || ||||||||||||    
T  13256539 tttgggatttgggttgatgaaaattgggattttcgcttgaaaactcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttctggaaatcgatt 13256441  T
Q  137 tttgggtggttgaaactcgaatctttct 164  Q
    ||| ||||||||||||| |||| |||||    
T  13256440 ttttggtggttgaaacttgaatttttct 13256413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 34 - 164
Target Start/End: Original strand, 19486165 - 19486295
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatc 132  Q
    ||||||| |||||||| | |||| ||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||||||| | |||||||| |    
T  19486165 cagtttttgggtttggtt-gatgaaaattgggattttcgcttgaatagtcggcgtctaaacgtttctgcaaataagtgattatgtgaggttttggaaacc 19486263  T
Q  133 gatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||||||||||| ||||| |||| |||||    
T  19486264 gatttttgggtggtttaaacttgaatttttct 19486295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 8249427 - 8249520
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataag 109  Q
    ||||||||||||||| ||||||| |||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||    
T  8249427 cacagactaagtttccaatcagtattggagtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataag 8249520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 48274332 - 48274202
Alignment:
Q  35 agttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcg 133  Q
    |||||| | |||||| | |||| ||||||||||||||||||||| ||||||||||||||  ||||||||||| || |||||||||| | |||||||| ||    
T  48274332 agtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatatttttgcaaatgagtgattatgtgaggttttggaaaccg 48274233  T
Q  134 atttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||| |||| |||||    
T  48274232 atttttgggtggttgaaactggaatttttct 48274202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 31 - 130
Target Start/End: Complemental strand, 13898328 - 13898230
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaa 130  Q
    ||||||||||||||||||||||||||||||||||  |||||| |||||||||||  || |||||| ||||||||||||||||||||||||| ||||||||    
T  13898328 aatcagttttggggtttgggtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgaggtttggaaa 13898230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 13698841 - 13698933
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||| | || |||| | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||    
T  13698841 cagttttggggtt-gagttgatgaagattgggattttcgcttgaaaagtaggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 13698933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 33002014 - 33001920
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||| ||||||||||||||| |||| |||||||||||||| ||| ||||||||  |||||||||||||| |||||||| ||||||||||| |||||    
T  33002014 aatcaattttggggtttgggttgatgaaaattgggattttctcttaaaaagtcg--gtctaaacgtttttacaaataagggattatgtgaggtttgg 33001920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 151
Target Start/End: Original strand, 17467609 - 17467700
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||||||| || |||||||||| ||||||||||||||||    
T  17467609 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgtgaggttctggaaatcgagttttgggtggttgaaa 17467700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 17585605 - 17585514
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 151  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||   || ||| |||||||| || |||||||||| ||||||||||||||||    
T  17585605 aaattgggattttcgcttgaaaactcggtgtctaaacgtttttgca---aacagagtatgtgaggttctggaaatcgagttttgggtggttgaaa 17585514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 31 - 126
Target Start/End: Complemental strand, 29004923 - 29004831
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttg 126  Q
    |||||||||||||||| ||||  ||| |||||| ||||||  |||||||||||||||||||||||  ||||||||||||||| |||||||| ||||    
T  29004923 aatcagttttggggtt-gggttaatgaaaattgagatttttccttgaaaagtcggtgtctaaacg--tttgcaaataagagactatgtgaggtttg 29004831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 3288958 - 3289078
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||||||| | ||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || || ||    
T  3288958 aatcagttttggggtt-gtgttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctgaaa 3289054  T
Q  130 atcgatttttgggtggttgaaact 153  Q
    ||||||||||||||||||||||||    
T  3289055 atcgatttttgggtggttgaaact 3289078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 121
Target Start/End: Complemental strand, 48744402 - 48744297
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||  ||||||||| ||| ||| |||  ||| |||||||  |||  |||||||||||||| ||||||||||| |||||||||||||| |    
T  48744402 cacagactaagtttaaaatcagttt-gggatttcggttcatgaaaattggagtttatgcttgaaaagtcggagtctaaacgttcttgcaaataagagact 48744304  T
Q  115 atgtgag 121  Q
    |||||||    
T  48744303 atgtgag 48744297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 10063122 - 10063199
Alignment:
Q  53 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaa 130  Q
    |||| |||||| |||||||||||||| ||||| |||||||| |||||||||||| || ||||||||||| ||| ||||    
T  10063122 gatgaaaattgagattttcgcttgaagagtcgatgtctaaatgtttttgcaaatgagtgattatgtgaggttttgaaa 10063199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 5295860 - 5295912
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggat 67  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  5295860 cacagactaagtttccaatcagtcttggggtttgagtcgatggaaattgggat 5295912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 5297033 - 5297085
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggat 67  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||||||    
T  5297033 cacagactaagtttccaatcagtcttggggtttgagtcgatggaaattgggat 5297085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 151
Target Start/End: Complemental strand, 37380706 - 37380615
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaa 151  Q
    |||||||||| || ||||||||| ||||||||| ||||||||||||   || ||| |||||||| || |||||||||| ||||||||||||||||    
T  37380706 aaattgggatctttgcttgaaaactcggtgtctcaacgtttttgca---aacagagtatgtgaggttctggaaatcgagttttgggtggttgaaa 37380615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 21734057 - 21734182
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  21734057 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 21734153  T
Q  129 aatcgatttttgggtggttgaaactcgaat 158  Q
    |||||| |||||| ||||||||||| ||||    
T  21734154 aatcga-ttttggttggttgaaacttgaat 21734182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 158
Target Start/End: Original strand, 21734616 - 21734741
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  21734616 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 21734712  T
Q  129 aatcgatttttgggtggttgaaactcgaat 158  Q
    |||||| |||||| ||||||||||| ||||    
T  21734713 aatcga-ttttggttggttgaaacttgaat 21734741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 5294687 - 5294735
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattg 63  Q
    ||||||||||||||| ||||||| |||||||||| ||||||||||||||    
T  5294687 cacagactaagtttccaatcagtattggggtttgagtcgatggaaattg 5294735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 15 - 162
Target Start/End: Original strand, 17430 - 17577
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||||| |||||||||| |||||||||||| |||||||||| ||||| ||| |||||| ||||| ||||| ||||||||||||    
T  17430 cacagactaagtttccaatcagtattggggtttgagtcgatggaaatagggattttcgtttgaatagttggtgtcaaaacg-ttttggaaataagagatt 17528  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatcttt 162  Q
    ||||||| ||| ||||||||||| |||||||||||||||| ||||||||    
T  17529 atgtgaggtttgggaaatcgattattgggtggttgaaacttgaatcttt 17577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 22703843 - 22703696
Alignment:
Q  18 agactaagtttcgaatcagttttggggtttgggtcgatggaaattggga-ttttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattat 116  Q
    |||||||||||| ||||||| ||||||||||||| |||||||||||||| |||||| ||||||| | |||||||||||| ||||||||||||| ||||||    
T  22703843 agactaagtttccaatcagtattggggtttgggttgatggaaattgggatttttcgtttgaaaaattggtgtctaaacg-ttttgcaaataagtgattat 22703745  T
Q  117 gtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||| || ||||||||||||||||||||||||||||| |||| |||||    
T  22703744 gtgaggttctggaaatcgatttttgggtggttgaaacttgaatttttct 22703696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 21245554 - 21245426
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||| |||||||| | ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| ||||||||    
T  21245554 cacaaactaagttcccaatcagttttggggtttgggtcgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagatt 21245455  T
Q  115 atgtgagattt-ggaaatcgatttttggg 142  Q
    ||||||| ||| |||||||||||||||||    
T  21245454 atgtgaggtttgggaaatcgatttttggg 21245426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 24273213 - 24273341
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||| | ||||||||||||||||||||||||||||| |||| ||||  |||||||||||||| ||||||||||||||||||| ||||||||    
T  24273213 cacagactaagttcccaatcagttttggggtttgggtcgatggaagttggaatttaagcttgaaaagtcggagtctaaacgtttttgcaaacaagagatt 24273312  T
Q  115 atgtgagattt-ggaaatcgatttttggg 142  Q
    ||||||| ||| || ||||||||||||||    
T  24273313 atgtgaggtttggggaatcgatttttggg 24273341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 6477432 - 6477563
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||||||||| ||||  |||||||||||||||||| |||||||||||||||||||||||  |||||||||||| |||||||||| | |||||||    
T  6477432 aatcagttttggggtt-gggttaatggaaattgggattttcccttgaaaagtcggtgtctaaacg--tttgcaaataagcgattatgtgaggttttggaa 6477528  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  6477529 atcgatttttgggtggttgaaacttgaatttttct 6477563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 34 - 164
Target Start/End: Complemental strand, 19358740 - 19358606
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcg 133  Q
    ||||||||||||||||||  ||| |||||| ||||||||||||||| || |||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  19358740 cagttttggggtttgggttaatgaaaattgagattttcgcttgaaacgttggtgtctaaacgtttttgcaaataagggattatgtgaggtttggaaatcg 19358641  T
Q  134 at----ttttgggtggttgaaactcgaatctttct 164  Q
    ||    |||||||||||||||||| |||| |||||    
T  19358640 atttttttttgggtggttgaaacttgaatttttct 19358606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 63 - 164
Target Start/End: Original strand, 24087798 - 24087899
Alignment:
Q  63 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctt 161  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| | ||||||||| ||||||||||| ||||||||| |||| ||    
T  24087798 gggattttcgcttgaaaagtcggtgtctaaacg-ttttgcaaataagtgattatgtgaggttttggaaatagatttttgggtagttgaaacttgaatgtt 24087896  T
Q  162 tct 164  Q
    |||    
T  24087897 tct 24087899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 45 - 127
Target Start/End: Original strand, 43707253 - 43707335
Alignment:
Q  45 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||  ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||    
T  43707253 tttgggttcatgaaaattgggattttcgcttgaaaggtcggtgtctaaacgtttttgcaaataagtgattatgtgaggtttgg 43707335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 26904258 - 26904164
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||||||||||| ||||||| ||||  |||||| |||||||||||  || |||||||||| ||||||||||||||||||||| |||||    
T  26904258 aatcagttttggggtttgggttgatggaa-ttggagttttcgtttgaaaagtcgaagtataaacgtttt-gcaaataagagattatgtgaggtttgg 26904164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 45617836 - 45617937
Alignment:
Q  63 gggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatttttgggtggttgaaactcgaatctt 161  Q
    ||||||||||  ||||||||| |||| ||| | |||||||||||||| ||||||||||| || |||||||||||||| |||||| ||||||| |||| ||    
T  45617836 gggattttcgtgtgaaaagtccgtgtataagcatttttgcaaataagcgattatgtgaggttctggaaatcgattttagggtgggtgaaacttgaatttt 45617935  T
Q  162 tc 163  Q
    ||    
T  45617936 tc 45617937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 45 - 127
Target Start/End: Complemental strand, 28350006 - 28349925
Alignment:
Q  45 tttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||||||||||   ||| | |||||||||||   | |||||||||| ||||||||||||||||||||| |||||    
T  28350006 tttgggtcgatggaaattggaggttttgtttgaaaagtcgaaatataaacgtttt-gcaaataagagattatgtgaggtttgg 28349925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 35722 - 35871
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    |||||| |||||||| ||||| | |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||     
T  35722 cacagattaagtttccaatcaatattggggtttgagtcgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagata 35820  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||| ||| | ||||||||||| |||| |||||    
T  35821 atgtgaggtttgggaaatcgatatttagatggttgaaacttgaatatttct 35871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 3749 - 3597
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| ||||| | |||||||||| | ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||     
T  3749 cacagactaagtttccaatcaatattggggtttgagccgatggaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagagatc 3651  T
Q  115 atgtgagattt-ggaaatcga---tttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||||||   ||||||||| ||||||||| |||| |||||    
T  3650 atgtgaggtttgggaaatcgattttttttgggtagttgaaacttgaatatttct 3597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0962 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0962
Description:

Target: scaffold0962; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 794 - 944
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||| | || ||||||||||||||||||||||||||||||| ||||  | ||||||||| || ||||||||||||||||||| ||||||||    
T  794 cacagactaagttcccaaccagttttggggtttgggtcgatggaaattggaatttatgtttgaaaagttggagtctaaacgtttttgcaaacaagagatt 893  T
Q  115 atgtgagattt-ggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| ||| |||||| ||||||| | ||||||||||| |||| |||||    
T  894 atgtgaggtttgggaaatagatttttagttggttgaaacttgaatttttct 944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0331 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: scaffold0331
Description:

Target: scaffold0331; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 4556 - 4424
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaa 129  Q
    |||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||| | |||||||    
T  4556 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaacg-ttttgcaaataagcgattatgtgaggttttggaa 4459  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  4458 atcgatttttgggtggttgaaacttgaatttttct 4424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 10952 - 11048
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  10952 aatcaattttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 11048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 5234 - 5330
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  5234 aatcaattttggggtttgggttgatgaaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttacaaataagggattatgtgaggtttgg 5330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0126 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 19 - 145
Target Start/End: Complemental strand, 6914 - 6787
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatg 117  Q
    ||||||||| | |||||||||||||||||||||||||||||||||  | |||  |||||||||||||| |||||||||||||| |||| |||||||||||    
T  6914 gactaagttcccaatcagttttggggtttgggtcgatggaaattgcaaatttatgcttgaaaagtcggagtctaaacgtttttccaaacaagagattatg 6815  T
Q  118 tgagatttggaaatcgatttttgggtgg 145  Q
    |||| |||||||||||||||| ||||||    
T  6814 tgaggtttggaaatcgattttggggtgg 6787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 164
Target Start/End: Original strand, 640 - 772
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgaga-tttggaa 129  Q
    |||||||||||||||| | ||  ||| |||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||| |||||||    
T  640 aatcagttttggggtt-gagttaatgaaaattgggattttcccttgaagagtcggtgtctaaacg-ttttgcaaataagcgattatgtgagattttggaa 737  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||||| |||| |||||    
T  738 atcgatttttgggtggttgaaacttgaatttttct 772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 19560 - 19438
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||| |||||||| | |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| || || || |||||    
T  19560 aatcagtttttgggtttggcttgatgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgcaaataagtgattacgtaaggttatggaa 19461  T
Q  130 atcgatttttgggtggttgaaac 152  Q
    | |||||||||||||||||||||    
T  19460 accgatttttgggtggttgaaac 19438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 11243 - 11154
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 120  Q
    |||||||| |||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  11243 aatcagttatggggtttgggttgatgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgaaaataagtgattatgtga 11154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 5123 - 5034
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga 120  Q
    |||||||| |||||||||||| |||| |||||| ||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||    
T  5123 aatcagttatggggtttgggttgatgaaaattgagattttcacatgaaaagtcggtgtctaaacgtttttgaaaataagtgattatgtga 5034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 3762 - 3613
Alignment:
Q  15 cacagactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagatt 114  Q
    ||||||||||||||| || |||| |||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  3762 cacagactaagtttccaaccagtattggggtttgagtcgatgtaaattgggattttcgtttgaaaagtcggtgtctaaacg-ttttgcaaataagtgatt 3664  T
Q  115 atgtga-gatttggaaatcgatttttgggtggttgaaactcgaatctttct 164  Q
     ||||| | |||  | | |||||||||||||||||||||| |||| |||||    
T  3663 gtgtgaggttttatacaacgatttttgggtggttgaaacttgaatttttct 3613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 31 - 152
Target Start/End: Complemental strand, 72511 - 72389
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgaga-tttggaa 129  Q
    |||||||||| | |||||| | |||| ||||||||||||||||||||| |||||||||||||| |||||| ||||| || |||||||||||| |||||||    
T  72511 aatcagtttttgagtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatgtttttacaaatgagtgattatgtgagattttggaa 72412  T
Q  130 atcgatttttgggtggttgaaac 152  Q
    | |||||||||||||||||||||    
T  72411 accgatttttgggtggttgaaac 72389  T

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Target: scaffold0447 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0447
Description:

Target: scaffold0447; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 7718 - 7598
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| |  |||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  7718 gactaagttcccaatcaattttggggtttgggtcgatggaaatttgagtttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 7619  T
Q  119 gagatttgg-aaatcgatttt 138  Q
    ||| ||||| |||||||||||    
T  7618 gaggtttggtaaatcgatttt 7598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0447; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 12332 - 12212
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| |  |||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  12332 gactaagttcccaatcaattttggggtttgggtcgatggaaatttgagtttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 12233  T
Q  119 gagatttgg-aaatcgatttt 138  Q
    ||| ||||| |||||||||||    
T  12232 gaggtttggtaaatcgatttt 12212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0383 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0383
Description:

Target: scaffold0383; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 19 - 138
Target Start/End: Complemental strand, 10327 - 10207
Alignment:
Q  19 gactaagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgt 118  Q
    ||||||||| | ||||| |||||||||||||||||||||||||| |  |||  |||||||||||||| ||||||||||||||||||| ||||||||||||    
T  10327 gactaagttcccaatcaattttggggtttgggtcgatggaaatttgagtttatgcttgaaaagtcggagtctaaacgtttttgcaaacaagagattatgt 10228  T
Q  119 gagatttgg-aaatcgatttt 138  Q
    ||| ||||| |||||||||||    
T  10227 gaggtttggtaaatcgatttt 10207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 33 - 164
Target Start/End: Complemental strand, 18698 - 18568
Alignment:
Q  33 tcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaat 131  Q
    |||||||||||||| ||||  ||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||| |||| ||||| | |||||| ||    
T  18698 tcagttttggggtt-gggtaaatgaaaattgggattttcgcttgaaaagtcggtgtctgaacg-ttttgcaaataagtgattgtgtgaggttttggagat 18601  T
Q  132 cgatttttgggtggttgaaactcgaatctttct 164  Q
    |||||||||||||||||||||| |||| |||||    
T  18600 cgatttttgggtggttgaaacttgaatttttct 18568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 139
Target Start/End: Original strand, 730 - 816
Alignment:
Q  53 gatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaatcgattttt 139  Q
    |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||| |||||||||||||||||    
T  730 gatgaaaattgggattttcgcttgaaaagtcagtgtctaaacgtttttgcaaataagatatcatgtgaggtttggaaatcgattttt 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1276 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1276
Description:

Target: scaffold1276; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 986 - 861
Alignment:
Q  38 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaaatcgatt 136  Q
    |||||| ||||||| | || ||||||||||||||||||||||| ||||||||||||  | |||||||||||| ||||||||||| || ||||||||||||    
T  986 tttgggatttgggttggtgaaaattgggattttcgcttgaaaactcggtgtctaaa--tgtttgcaaataagtgattatgtgaggttctggaaatcgatt 889  T
Q  137 tttgggtggttgaaactcgaatctttct 164  Q
     |||||||||||||||| |||| |||||    
T  888 gttgggtggttgaaacttgaatttttct 861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 31 - 127
Target Start/End: Original strand, 2042 - 2138
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||  ||||| ||| |||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||    
T  2042 aatcagtttttaggtttaggttgatgaaaattgggatttttgcttgaaaagtcagtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 2138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0825 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0825
Description:

Target: scaffold0825; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 42 - 127
Target Start/End: Original strand, 594 - 679
Alignment:
Q  42 gggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||| || |||| | |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||    
T  594 gggtttgagttgatgaagattgagattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagggattatgtgaggtttgg 679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 7125 - 7033
Alignment:
Q  34 cagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||| | || |||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  7125 cagttttggggtt-gagttgatgaaaattgggattttcgtttgaaaagtcggtgtctaaacgtttttccaaataagggattatgtgaggtttgg 7033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 153
Target Start/End: Original strand, 1466 - 1586
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  1466 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 1562  T
Q  129 aatcgatttttgggtggttgaaact 153  Q
    ||||||||||| |||||||||||||    
T  1563 aatcgattttt-ggtggttgaaact 1586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 38 - 130
Target Start/End: Complemental strand, 35337 - 35245
Alignment:
Q  38 tttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttggaaa 130  Q
    |||||| ||| ||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| ||| ||||    
T  35337 tttgggatttaggttgatgtaaattgggattttcgcttgtaaagttggtgtctaaacgtttttgcaaataagggattatgtgaggtttcgaaa 35245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 127
Target Start/End: Complemental strand, 52070 - 51966
Alignment:
Q  22 taagtttcgaatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgag 121  Q
    |||||| | ||||| |||||||||||| |||||||||||||||  |||||| |||||||||||  || |||||| |||||||||||||||||||||||||    
T  52070 taagttcccaatcaattttggggtttgagtcgatggaaattggagttttcgtttgaaaagtcgaagtataaacg-ttttgcaaataagagattatgtgag 51972  T
Q  122 atttgg 127  Q
     |||||    
T  51971 gtttgg 51966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0080
Description:

Target: scaffold0080; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 29835 - 29741
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  29835 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaac-attttgcaaataagagactatgtgaggtttgg 29741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0080; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 35300 - 35206
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    |||||||||||||||| ||||  ||| |||||||||||||| ||||||||||||||||||||||  |||||||||||||||| |||||||| |||||    
T  35300 aatcagttttggggtt-gggttaatgaaaattgggattttcccttgaaaagtcggtgtctaaac-attttgcaaataagagactatgtgaggtttgg 35206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 31 - 164
Target Start/End: Complemental strand, 147475 - 147344
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatt-tggaa 129  Q
    |||||||||||||||| ||||  ||| ||||||| ||||  | |||||||||||||||| || |||||| ||||||||| ||||||||||| || |||||    
T  147475 aatcagttttggggtt-gggttaatgaaaattggaatttatgtttgaaaagtcggtgtccaa-cgtttt-gcaaataagtgattatgtgaggttctggaa 147379  T
Q  130 atcgatttttgggtggttgaaactcgaatctttct 164  Q
    ||||||| |||||||||||||||| |||| |||||    
T  147378 atcgattgttgggtggttgaaacttgaatttttct 147344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0106 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0106
Description:

Target: scaffold0106; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 21810 - 21741
Alignment:
Q  58 aaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagatttgg 127  Q
    ||||||||||||||||| |||||| ||||||||||||||| ||||||||||| ||||||||||| |||||    
T  21810 aaattgggattttcgctcgaaaagacggtgtctaaacgttcttgcaaataagggattatgtgaggtttgg 21741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 117268 - 117148
Alignment:
Q  44 gtttgggtcgatggaaattgggattttcgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtga-gatttggaaatcgatttttggg 142  Q
    |||||| | |||| ||||||||||||||||||||| |||||||||||||| | |||||||||| || |||||||||| | ||| |||| ||  |||||||    
T  117268 gtttggattgatgaaaattgggattttcgcttgaagagtcggtgtctaaatg-ttttgcaaatgagtgattatgtgaggttttagaaaccgtattttggg 117170  T
Q  143 tggttgaaactcgaatctttct 164  Q
    ||||||||||| |||| |||||    
T  117169 tggttgaaactggaatttttct 117148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0309 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0309
Description:

Target: scaffold0309; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 8990 - 8881
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggattttc-gcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    |||||||||||||||| ||||  ||| |||||||||||||  | ||||||||| |||||| || |||||| ||||||||||||| ||||||| ||| |||    
T  8990 aatcagttttggggtt-gggttaatgaaaattgggattttatgtttgaaaagttggtgtccaa-cgtttt-gcaaataagagatcatgtgagttttggga 8894  T
Q  129 aatcgatttttgg 141  Q
    |||||||||||||    
T  8893 aatcgatttttgg 8881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 31 - 141
Target Start/End: Complemental strand, 5734 - 5626
Alignment:
Q  31 aatcagttttggggtttgggtcgatggaaattgggatttt-cgcttgaaaagtcggtgtctaaacgtttttgcaaataagagattatgtgagattt-gga 128  Q
    |||||||||||||| ||||||  ||| |||||||||||||  | ||||||||| |||| |  |||| ||||||||||||||||| ||||||| ||| |||    
T  5734 aatcagttttgggg-ttgggttaatgaaaattgggattttatgtttgaaaagttggtgcc--aacg-ttttgcaaataagagatcatgtgagttttggga 5639  T
Q  129 aatcgatttttgg 141  Q
    |||||||||||||    
T  5638 aatcgatttttgg 5626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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