View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_19 (Length: 427)
Name: NF12991_high_19
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 46364288 - 46364566
Alignment:
| Q |
1 |
ttatcaacaaagtgccaagtagtaaactaaacaattgacgggttaatgaatttcactataagacgagnnnnnnnataaggatttaagttcgattcttgaa |
100 |
Q |
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| T |
46364288 |
ttatcaacaaagtgccaattagtaaactaaacaattgactgattaatgaatttcactataaggcgagtttttttataaagatttaagttcgattcttgaa |
46364387 |
T |
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| Q |
101 |
tgaaataatttttgactcttcctatgagaatcagagggtcaacacttttgactctatcagcgagaatccgagggtt-nnnnnnngtgttaattactccaa |
199 |
Q |
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| T |
46364388 |
tgaaataatttttgactcttcctatgagaatcagagggttaacacttttgactctgtcagtgagaatccgagggttaaaaaaaagtgttaattactccaa |
46364487 |
T |
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| Q |
200 |
cttataaaacatatccaatgagcggcaacttgttttactccaacctcaggtgcatttgttaatatggtcatccattata |
278 |
Q |
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| T |
46364488 |
cttataaaacatatccaatgagcggcaacttgttttactccaacctcatgtgcatttgttaatatggtcatccattata |
46364566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 274 - 415
Target Start/End: Original strand, 46364954 - 46365102
Alignment:
| Q |
274 |
ttatacttaatgcaaagaatagaaa-------tttgaaatattgaaaaagacggcattctagcactgtcacattggattccccagagaggaacaacaagt |
366 |
Q |
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| T |
46364954 |
ttatacttaatgcaaagaatagaaatttgaaatttgaaatattgaaaaagacggcattctagcattgtcacattggattccccagagaggaacaacaagt |
46365053 |
T |
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| Q |
367 |
ctgcagttaatgtaaaatgtcttgctgccattttctccattcctcttca |
415 |
Q |
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| T |
46365054 |
ctgcagttaatgtaaaatgtcttgctgccattttctccattcctcttca |
46365102 |
T |
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