View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_24 (Length: 354)
Name: NF12991_high_24
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 44 - 301
Target Start/End: Complemental strand, 25468186 - 25467930
Alignment:
| Q |
44 |
atgatagagaattattaattaggagagagataaagacaaaatcatcaaaataaccaaactcaaagtcttcgaagtgctacccttactttggccaacatag |
143 |
Q |
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| T |
25468186 |
atgagagagaattattaattatgagagagatagagacaaaatcatcaaaataatcgaactcaaagtcattgaagtgttacccttactttggccaacatag |
25468087 |
T |
|
| Q |
144 |
gtccatacctaaataatattttgtatttttatcgtgagtctaagatcattgtgatagtgaggtggaaagtcacaaccaaaatggttgtttccccttgtta |
243 |
Q |
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| T |
25468086 |
gtccatacccagataatattttgtatttt-atcgtgagtctaagatcattgtgacagtgaggtgcaaagtcacagccaaaatggttgtttccccttgtta |
25467988 |
T |
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| Q |
244 |
ttactagagaggttaatatatgtaaatggttgttattacaattaattaatcaacagaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25467987 |
ttactagagaggttaatatatgtaaatggttgttattacaattaattaatcaacagaa |
25467930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 25473069 - 25473014
Alignment:
| Q |
218 |
accaaaatggttgtttccccttgttattactagagaggttaatatatgtaaatggt |
273 |
Q |
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| T |
25473069 |
accaaaatgattgtttacctttgttattaatagagaggttaatatatgtgaatggt |
25473014 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 41951224 - 41951174
Alignment:
| Q |
44 |
atgatagagaattattaattaggagagagataaagacaaaatcatcaaaat |
94 |
Q |
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| T |
41951224 |
atgagagagaattattgattaggagagagatagagacaaagtcatcaaaat |
41951174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 42691120 - 42691159
Alignment:
| Q |
44 |
atgatagagaattattaattaggagagagataaagacaaa |
83 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| |
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| T |
42691120 |
atgagagagaattattaattaggagagagatagagacaaa |
42691159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 28640196 - 28640263
Alignment:
| Q |
49 |
agagaattattaattaggagagagataaagacaaaatcatcaaaataaccaaactcaaagtcttcgaa |
116 |
Q |
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| T |
28640196 |
agagagttatttattaggagaaagatagagacaaagtcaccaaaatcaccgaactcaaagtcatcgaa |
28640263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 107
Target Start/End: Complemental strand, 31175983 - 31175923
Alignment:
| Q |
49 |
agagaattattaa--ttaggagagagataaagacaaaatcatcaaaataaccaaactcaaa |
107 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||| ||| | |||||||||||| |
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| T |
31175983 |
agagaattattaaaattaggaaagagataaaaacaaaatcatgaaagtcaccaaactcaaa |
31175923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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