View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_28 (Length: 319)
Name: NF12991_high_28
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_28 |
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Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 177 - 298
Target Start/End: Complemental strand, 1080646 - 1080525
Alignment:
| Q |
177 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaacttcgtc |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||| |
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| T |
1080646 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagaaaacctctaagttcgtc |
1080547 |
T |
|
| Q |
277 |
aacattgaaaatacacatagtt |
298 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
1080546 |
aacattgaaaatacacatagtt |
1080525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 1080806 - 1080701
Alignment:
| Q |
17 |
acttccaaattcacatcctcaagagatgcgaaacactttggcacaacagcagaattcaaacgctcttccgcaaattcatgtattccctaatgataaacca |
116 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1080806 |
acttccaaattcacatcctcaagagatgcgaaacattttggcacaacagcagaattcaaacgctcttccgcaaattcatgtattccctaatgataaacca |
1080707 |
T |
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| Q |
117 |
accatc |
122 |
Q |
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|||||| |
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| T |
1080706 |
accatc |
1080701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 177 - 295
Target Start/End: Original strand, 5131161 - 5131279
Alignment:
| Q |
177 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaacttcgtc |
276 |
Q |
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|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5131161 |
ctaattgccaaccttgagagctagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaagttcgtc |
5131260 |
T |
|
| Q |
277 |
aacattgaaaatacacata |
295 |
Q |
| |
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||||||||||||||||||| |
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| T |
5131261 |
aacattgaaaatacacata |
5131279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 5131010 - 5131106
Alignment:
| Q |
26 |
ttcacatcctcaagagatgcgaaacactttggcacaacagcagaattcaaacgctcttccgcaaattcatgtattccctaatgataaaccaaccatc |
122 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5131010 |
ttcacatcttcaagagatgcgaaacactttggcacaacagcagaattcaaacgctcttccgcaaattcatgtattccctaatgataaaccaaccatc |
5131106 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 13019069 - 13019021
Alignment:
| Q |
38 |
agagatgcgaaacactttggcacaacagcagaattcaaacgctcttccg |
86 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13019069 |
agagatgcgaaacactttggcacaacagcagaattcaaacgctcttccg |
13019021 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 231
Target Start/End: Complemental strand, 13018930 - 13018876
Alignment:
| Q |
177 |
ctaattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaa |
231 |
Q |
| |
|
||||||| ||||||||||| |||| ||| |||| |||||||||||||||||||| |
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| T |
13018930 |
ctaattatcaaccttgagaactagtgtctgaagagctggtgatttttgaagtaaa |
13018876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 296
Target Start/End: Complemental strand, 581210 - 581092
Alignment:
| Q |
178 |
taattaccaaccttgagagttagtatcttaagaactggtgatttttgaagtaaagctaagagaacatcaacactaacgaagtaaacatctaacttcgtca |
277 |
Q |
| |
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||||||| |||||||||| ||| ||| ||||| |||| |||||||| || | |||||||| |||||||||||||||| ||| || || | |||| |
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| T |
581210 |
taattacgaaccttgagaacaagtgtctcgagaaccggtgccttttgaagcaaggttaagagaatatcaacactaacgaagccaacctccaaatgggtca |
581111 |
T |
|
| Q |
278 |
acattgaaaatacacatag |
296 |
Q |
| |
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|||||| |||||||||||| |
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| T |
581110 |
acattggaaatacacatag |
581092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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