View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_29 (Length: 302)
Name: NF12991_high_29
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_29 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 3283494 - 3283699
Alignment:
| Q |
13 |
atactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataatta |
112 |
Q |
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| T |
3283494 |
atactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagataatactgtcatagaaaatctctgatttttgcttaataatta |
3283593 |
T |
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| Q |
113 |
ctattttgatcaatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacctaa |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3283594 |
ctattttgatcaatatacatcaatttatggttctaggttcgattccttgaacctaatttctagaaatgcaggcaaacagacacgatgggagttgacccaa |
3283693 |
T |
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| Q |
213 |
atattg |
218 |
Q |
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|||||| |
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| T |
3283694 |
atattg |
3283699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 215 - 283
Target Start/End: Original strand, 3283735 - 3283803
Alignment:
| Q |
215 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgtgtggctatagccacacacag |
283 |
Q |
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| T |
3283735 |
attgtacgagatttagtataagaaaaaacaaattgggtaatgatcatgtgtggctatagccacacacag |
3283803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 119
Target Start/End: Original strand, 1175537 - 1175640
Alignment:
| Q |
13 |
atactaaaaataagaaataataatgttcgcctctagaaagcacataaaaagtaagagatattactgtcatagaaaatctctgatttttgcctaataatta |
112 |
Q |
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||||||||||||||||||||||||||| | ||||| ||| ||| ||||| ||||||| | || |||||||||||| |||||| |||||||||||| ||| |
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| T |
1175537 |
atactaaaaataagaaataataatgtttgtctctacaaa--acagaaaaattaagagacaata-tgtcatagaaaaactctgaattttgcctaatactta |
1175633 |
T |
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| Q |
113 |
ctatttt |
119 |
Q |
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||||||| |
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| T |
1175634 |
ctatttt |
1175640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 119
Target Start/End: Original strand, 18633945 - 18633987
Alignment:
| Q |
77 |
tgtcatagaaaatctctgatttttgcctaataattactatttt |
119 |
Q |
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| T |
18633945 |
tgtcatagaaaaactctgatttttgcctaataattactatttt |
18633987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 4700550 - 4700596
Alignment:
| Q |
10 |
attatactaaaaataagaaataataatgttcgcctctagaaagcaca |
56 |
Q |
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| T |
4700550 |
attatactaaaaataagaaataatattgtttgtctttagaaagcaca |
4700596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 4701258 - 4701303
Alignment:
| Q |
126 |
tatacatcaatttatggttctaggttcgattccttgaacctaattt |
171 |
Q |
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|||||||||| ||||||||||||||| |||||||| ||| |||||| |
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| T |
4701258 |
tatacatcaagttatggttctaggtttgattccttaaacttaattt |
4701303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 1175744 - 1175780
Alignment:
| Q |
126 |
tatacatcaatttatggttctaggttcgattccttga |
162 |
Q |
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||||||||||||||| ||||||||||||||| ||||| |
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| T |
1175744 |
tatacatcaatttatagttctaggttcgattacttga |
1175780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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