View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_high_30 (Length: 300)

Name: NF12991_high_30
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_high_30
NF12991_high_30
[»] chr5 (7 HSPs)
chr5 (1-281)||(32558534-32558816)
chr5 (129-266)||(32739369-32739506)
chr5 (205-281)||(32762351-32762427)
chr5 (167-281)||(28474179-28474287)
chr5 (220-281)||(32660846-32660907)
chr5 (167-236)||(32656784-32656854)
chr5 (225-281)||(32662621-32662677)
[»] chr1 (3 HSPs)
chr1 (140-281)||(17582792-17582930)
chr1 (140-276)||(17590689-17590832)
chr1 (35-123)||(17590540-17590629)
[»] chr7 (2 HSPs)
chr7 (135-267)||(7970574-7970706)
chr7 (153-232)||(37576412-37576493)
[»] chr2 (1 HSPs)
chr2 (205-263)||(16751831-16751889)


Alignment Details
Target: chr5 (Bit Score: 260; Significance: 1e-145; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 32558816 - 32558534
Alignment:
Q  1 caatacttatttactttacattgggttggaatattaattatgaatgtctttagttttgtataaccttcaatttttaaacttttatgtgtacagtatgaac 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  32558816 caatacttatttactttacattgggtttgaatattaattatgaatgtctttagttttgtataaccttcaatttttgaacttttatgtgtacagtatgaac 32558717  T
Q  101 ttcttgtatggcttccctaaacttcgaaatagactttaagaagaaaaatttgagaatgattag--ttgtgttggttatacttttgattgcacgacatgct 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  32558716 ttcttgtatggcttccctaaacttcgaaatagactttaagaagaaaaatttgagaatgattagttttgtgttggttatacttttgattgcacgacatgct 32558617  T
Q  199 aacaagccttgcaaagaaatctcttattttattttattctacctaatggttcaaagtctaatttgatgactatcttttatgtt 281  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32558616 aacaagccttgcaaagaaatctcttactttattttattctacctaatggttcaaagtctaatttgatgactatcttttatgtt 32558534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 129 - 266
Target Start/End: Original strand, 32739369 - 32739506
Alignment:
Q  129 atagactttaagaagaaaaatttgagaatgattagttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttatttt 228  Q
    ||||| ||||||||||| ||  | || |||||||| | ||||||||||||||||||| | |  || ||||||||||||||  |||||||| ||||| |||    
T  32739369 atagattttaagaagaataaacttagtatgattagctttgttggttatacttttgatcgtataacttgctaacaagccttataaagaaatgtcttacttt 32739468  T
Q  229 attttattctacctaatggttcaaagtctaatttgatg 266  Q
    |||||||| || | | |||||||||||| |||||||||    
T  32739469 attttattatagcaattggttcaaagtcgaatttgatg 32739506  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 205 - 281
Target Start/End: Original strand, 32762351 - 32762427
Alignment:
Q  205 ccttgcaaagaaatctcttattttattttattctacctaatggttcaaagtctaatttgatgactatcttttatgtt 281  Q
    |||| |||||| ||||||||||||||||||||||| | ||||||||||| ||||||||||||| |  ||||||||||    
T  32762351 ccttacaaagacatctcttattttattttattctaacaaatggttcaaactctaatttgatgatttgcttttatgtt 32762427  T

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Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 167 - 281
Target Start/End: Original strand, 28474179 - 28474287
Alignment:
Q  167 tgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttattttattttattctacctaatggttcaaagtctaatttgatg 266  Q
    |||||||||||||||||||| ||  || |||||||||||||| ||| ||| ||||||||     ||||||||| | ||||||||||||| ||||||||||    
T  28474179 tgttggttatacttttgattacaaaacttgctaacaagccttacaatgaa-tctcttat-----tttattctaacaaatggttcaaagtataatttgatg 28474272  T
Q  267 actatcttttatgtt 281  Q
    | | |||||||||||    
T  28474273 attttcttttatgtt 28474287  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 220 - 281
Target Start/End: Complemental strand, 32660907 - 32660846
Alignment:
Q  220 tcttattttattttattctacctaatggttcaaagtctaatttgatgactatcttttatgtt 281  Q
    ||||||| |||||||||||| | |||||||||| |||||||||||||| | |||||| ||||    
T  32660907 tcttattatattttattctagcaaatggttcaacgtctaatttgatgagtttcttttttgtt 32660846  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 236
Target Start/End: Complemental strand, 32656854 - 32656784
Alignment:
Q  167 tgttggttatacttttgattgcacgacatgctaacaagcc-ttgcaaagaaatctcttattttattttatt 236  Q
    |||||||||||||||| |||||| | | |||||||||||| || || |||||| || ||||||||||||||    
T  32656854 tgttggttatacttttaattgcatggcttgctaacaagcctttacatagaaatgtcctattttattttatt 32656784  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 32662677 - 32662621
Alignment:
Q  225 ttttattttattctacctaatggttcaaagtctaatttgatgactatcttttatgtt 281  Q
    ||||||||||||||| | ||||||||  ||||||||||||| | | |||||||||||    
T  32662677 ttttattttattctagcaaatggttcttagtctaatttgattattttcttttatgtt 32662621  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 140 - 281
Target Start/End: Original strand, 17582792 - 17582930
Alignment:
Q  140 gaagaaaaatttgagaatgattag--ttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttattttattttattc 237  Q
    |||||| || ||||||||||||||  || |||||||||||||||||||||||  |  |||||||||||||| |||| |||||     |||||||||||||    
T  17582792 gaagaataaattgagaatgattagctttatgttggttatacttttgattgcataatttgctaacaagccttacaaataaatc-----ttttattttattc 17582886  T
Q  238 tacctaatggttcaaagtctaatttgatgactatcttttatgtt 281  Q
    || | ||||||||||||||||||||||||| | ||||| |||||    
T  17582887 taacaaatggttcaaagtctaatttgatgattttctttgatgtt 17582930  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 140 - 276
Target Start/End: Original strand, 17590689 - 17590832
Alignment:
Q  140 gaagaaaaatttgagaatgattagttgt--gttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttattt-----tattt 232  Q
    |||||| || |||||||||||||| |||  |||| ||||||||||| |||||  || |||||||||||||  ||||||||||||||||||     |||||    
T  17590689 gaagaataaattgagaatgattagctgtatgttgattatacttttggttgcataacttgctaacaagcctcacaaagaaatctcttattttattatattt 17590788  T
Q  233 tattctacctaatggttcaaagtctaatttgatgactatctttt 276  Q
    ||||||| | ||| | ||||||||||||||||||| | ||||||    
T  17590789 tattctaacaaatcgatcaaagtctaatttgatgattttctttt 17590832  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 123
Target Start/End: Original strand, 17590540 - 17590629
Alignment:
Q  35 taattatgaatgtctttagttttgtataaccttcaatttttaaacttttat--gtgtacagtatgaacttcttgtatggcttccctaaact 123  Q
    ||||| |||||||||||| ||||||||| ||||| |||||| |  ||||||  |||||  ||||||||||||||||| | |||||||||||    
T  17590540 taattgtgaatgtctttaattttgtata-ccttctatttttgagtttttatatgtgtatggtatgaacttcttgtattgtttccctaaact 17590629  T

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Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 135 - 267
Target Start/End: Complemental strand, 7970706 - 7970574
Alignment:
Q  135 tttaagaagaaaaatttgagaatgattag-ttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttattttatttt 233  Q
    ||||||||||| || || |||||||| || || ||||||||||||||||||||||| |   |||||||||||||| || | |||||||||| ||||||||    
T  7970706 tttaagaagaataaattaagaatgatcagcttatgttggttatacttttgattgcatggtctgctaacaagccttacata-aaatctcttactttatttt 7970608  T
Q  234 attctacctaatggttcaaagtctaatttgatga 267  Q
    ||| ||   |||||||||||||||||||||||||    
T  7970607 attatagaaaatggttcaaagtctaatttgatga 7970574  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 153 - 232
Target Start/End: Original strand, 37576412 - 37576493
Alignment:
Q  153 agaatgattag--ttgtgttggttatacttttgattgcacgacatgctaacaagccttgcaaagaaatctcttattttattt 232  Q
    |||||||||||  || |||||||||||||||||||||||  || |||||||||||||| ||||||| |||||||||||||||    
T  37576412 agaatgattagatttatgttggttatacttttgattgcataacttgctaacaagccttacaaagaattctcttattttattt 37576493  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 263
Target Start/End: Original strand, 16751831 - 16751889
Alignment:
Q  205 ccttgcaaagaaatctcttattttattttattctacctaatggttcaaagtctaatttg 263  Q
    |||| ||| |||| |||||| ||||||||| |||| | |||||||||||||||||||||    
T  16751831 ccttacaatgaaacctcttactttattttactctatcaaatggttcaaagtctaatttg 16751889  T

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