View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_37 (Length: 237)
Name: NF12991_high_37
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_37 |
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| [»] scaffold1583 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 231
Target Start/End: Original strand, 12921890 - 12922110
Alignment:
| Q |
11 |
tcatcactcaaaccgttcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggat |
110 |
Q |
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| T |
12921890 |
tcatcactcaaaccgctcctcatctcaaaaccttctctcaatcgaaaccaaataagacaaaatcttctcaatcgattggtgttcgtagatcaaacaggat |
12921989 |
T |
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| Q |
111 |
tagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctcca |
210 |
Q |
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| T |
12921990 |
tagggctggaataggaatcagaaaaactcaaagtgtagacactacagtacatgaaattcctgattctgaagatgaagcaaaccacagagaagctgttcca |
12922089 |
T |
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| Q |
211 |
aaataaccttctgatgatgtc |
231 |
Q |
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| T |
12922090 |
acagaaccttctgttgatgtc |
12922110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1583 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: scaffold1583
Description:
Target: scaffold1583; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 912 - 1142
Alignment:
| Q |
1 |
tctccaccagtcatcactcaaaccgttcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagat |
100 |
Q |
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| T |
912 |
tctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcaaaaccaaagaagacaaaatcttctcaatcaattggtgttcgtagat |
1011 |
T |
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| Q |
101 |
caaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagaga |
200 |
Q |
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| T |
1012 |
caaacagaattagggctggaataggaatgagaaaaactcaaagtgtagatactacagtacatgaaattcctgattctgaagatgaaacaaaccacagaga |
1111 |
T |
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| Q |
201 |
tgctgctccaaaataaccttctgatgatgtc |
231 |
Q |
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| T |
1112 |
agctgttccaacagaatcttctgttgatgtc |
1142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 14275775 - 14275545
Alignment:
| Q |
1 |
tctccaccagtcatcactcaaaccgttcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagat |
100 |
Q |
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| T |
14275775 |
tctccaccaatcatcactcaaaccgctcctcatctcaaaaatttctctcaatcgaaaccaaagaagacaaaatcttctcaatcaattggtgttcgtagat |
14275676 |
T |
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| Q |
101 |
caaataggattagggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagaga |
200 |
Q |
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| T |
14275675 |
caaacagaattagagctgaaataggattgagaaaaactcaatgtgtagatactacagtacatgaaattcatgattctgaagatgaaaccaaccacagaga |
14275576 |
T |
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| Q |
201 |
tgctgctccaaaataaccttctgatgatgtc |
231 |
Q |
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| T |
14275575 |
agttgttccaacagaaccttctgttgatgtc |
14275545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 13 - 232
Target Start/End: Complemental strand, 14638485 - 14638266
Alignment:
| Q |
13 |
atcactcaaaccgttcctcatctcaagactttctctcaattgaaaccaaagaagacaaaatcttctcaattgattggtgttcgaagatcaaataggatta |
112 |
Q |
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| T |
14638485 |
atcactcaaaccgctcctcatctaaaagctctttctcaatcgaaacccaagaagacaaaatcttctcaatcgattggtattcgtagatcaaacaggatta |
14638386 |
T |
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| Q |
113 |
gggctggaattggaatcggaaaaactcaaagtgtccatactacagcacacaaaattcctaattctgaagatgaagcaaaccacagagatgctgctccaaa |
212 |
Q |
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| T |
14638385 |
gggctggaataggaataaggaaaactcaaagtgtagatactacagtacatgaaattcctgattctgaagatgaaactacccacagagaagctgttccaac |
14638286 |
T |
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| Q |
213 |
ataaccttctgatgatgtcc |
232 |
Q |
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| T |
14638285 |
agaaccttctgttgatgtcc |
14638266 |
T |
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