View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_high_4 (Length: 795)
Name: NF12991_high_4
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 923661 - 923940
Alignment:
| Q |
18 |
aaaatggtgtctttttagagttctttaaaagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacat |
117 |
Q |
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| T |
923661 |
aaaatggtgtctttttagatttctttaagagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacat |
923760 |
T |
|
| Q |
118 |
ggacatgtgttctaataataacttttataattgatttttctgcgttgagatgaggctgttaatgtcacgcttgattttgaaaatgtgaacacgtccgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
923761 |
ggacatgtgttctaataataacttttataattgatttttctgcgttgagatgaggctgttaatgtcacgcttgattttgaaaatgtgaacacgtccgatt |
923860 |
T |
|
| Q |
218 |
ttgaaaatgttaacataggtgatgaggttgtaaaagacaatgatgaacccaacctgggcatggattactctgaagctgca |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
923861 |
ttgaaaatgttaacataggtgatgaggttgtaaaagacaatgatgaacctaacctgggcatggattgctctgaagctgca |
923940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 516 - 765
Target Start/End: Original strand, 22996503 - 22996749
Alignment:
| Q |
516 |
atagctctatttcattttaacgagatggtttgaatcttagatcagctgcattacatgatatgcattgaaatttttagcacatttattctcttatgagtca |
615 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||| |||||| |
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| T |
22996503 |
atagctctatttcattttaacgagacggtttgaatcttagatcagctgcattacatgatatg--ttgaaatttttatcacaattattctctt--gagtca |
22996598 |
T |
|
| Q |
616 |
tcatctgaataagttatttgaatttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattg |
715 |
Q |
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|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || || |
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| T |
22996599 |
tcatctatataagttatttggatttttagcatataggacagtacactagcgagtttatattcattattaactcctctcacatcagatttattttgtaatg |
22996698 |
T |
|
| Q |
716 |
ttaataacttttgctttgttatgttgataaaatgactag-atttactcttt |
765 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
22996699 |
ttaataacttttgctttgttatgttgataaaatgactagaatttactcttt |
22996749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 8e-57
Query Start/End: Original strand, 669 - 785
Target Start/End: Original strand, 923980 - 924096
Alignment:
| Q |
669 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactagatttactctttaac |
768 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
923980 |
tttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgttatgttgataaaatgactggatttactctttaac |
924079 |
T |
|
| Q |
769 |
ctaattctttgcctatg |
785 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
924080 |
ctaattctttgcctatg |
924096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 637 - 784
Target Start/End: Complemental strand, 22964946 - 22964799
Alignment:
| Q |
637 |
atttttagcatataggacagtacactagcgagtttatattcatcattaactcctctcacatcagatttatttcatattgttaataacttttgctttgtta |
736 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| || |||||||||| |||||||||||| |
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| T |
22964946 |
atttttagcatataggacagtacactagcgagtttatattcattattaactcctctcatatcaaatttatttcgtaatgttaataac-tttgctttgtta |
22964848 |
T |
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| Q |
737 |
tgttgataaaatgactag-atttactctttaacctaattctttgcctat |
784 |
Q |
| |
|
|||||||||||| ||||| || |||||||| || ||||||||||||| |
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| T |
22964847 |
tgttgataaaataactagaatatactcttttgactgattctttgcctat |
22964799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 41 - 157
Target Start/End: Complemental strand, 2191819 - 2191702
Alignment:
| Q |
41 |
tttaaaagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacatggacatgtgttctaataataa-c |
139 |
Q |
| |
|
||||| || ||| ||||||||| ||||| || |||| ||||||||||||||| | ||| |||||||||||||||| |||||| |||| ||| ||| | |
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| T |
2191819 |
tttaagagcttatatagaaaaaaggtgtcgttgaagagcttagaaatgaatgcaactgatataagtttcaaacacatatacatgtattctgatactaacc |
2191720 |
T |
|
| Q |
140 |
ttttataattgatttttc |
157 |
Q |
| |
|
|||| ||||||||||||| |
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| T |
2191719 |
ttttgtaattgatttttc |
2191702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 145; Significance: 7e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 7e-76
Query Start/End: Original strand, 296 - 503
Target Start/End: Complemental strand, 10526738 - 10526524
Alignment:
| Q |
296 |
catatcagttctctgatcttggctgctaaaagtccgttcttctataaggcagaccaagatctctatatcttta-------cattgtatagttttgccaaa |
388 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| |
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| T |
10526738 |
catatcagttctccgatcttggctgctaaaagcccgttcttctataaggtagaccaagttctctatatctttatattgtacattgtatagttctgccaaa |
10526639 |
T |
|
| Q |
389 |
aatttgttttcttagcagtgtttatttacctgttgcagcttttttccaatgggatgagggaatcagaactgagacatgtcactcttaggattaatgcctc |
488 |
Q |
| |
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||| ||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| |
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| T |
10526638 |
aatatgttttcttagcagtgtttatttaccttttgcagcttttttcgaatgggatgagggaatcggaactgagacatgtcacccttagaattaatgcctc |
10526539 |
T |
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| Q |
489 |
tggtataaacattga |
503 |
Q |
| |
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||||||||||||||| |
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| T |
10526538 |
tggtataaacattga |
10526524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 166 - 297
Target Start/End: Complemental strand, 10526891 - 10526760
Alignment:
| Q |
166 |
gatgaggctgttaatgtcacgcttgattttgaaaatgtgaacacgtccgattttgaaaatgttaacataggtgatgaggttgtaaaagacaatgatgaac |
265 |
Q |
| |
|
|||||||||||| ||| || | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
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|
| T |
10526891 |
gatgaggctgttcatgacatgtctgattttgaaaatgtgaacacgtctgattttgaaaatgttaacataggtgatgaggctgtaaacgacaatgatgaac |
10526792 |
T |
|
| Q |
266 |
ccaacctgggcatggattactctgaagctgca |
297 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| |
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|
| T |
10526791 |
ccaacctgggcatggattactctgaacctgca |
10526760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 27540958 - 27540809
Alignment:
| Q |
18 |
aaaatggtgtctttttagagttctttaaaagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacat |
117 |
Q |
| |
|
||||| ||||| ||||| |||||||||| ||||||||||||||||| ||||||||| | || ||| |||||||||||| ||||||||||||||||||| |
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| T |
27540958 |
aaaatagtgtcgttttatagttctttaagagtttagatagaaaaatggtgtctttt-atagcttataaatgaatgcagataatctaagtttcaaacacat |
27540860 |
T |
|
| Q |
118 |
ggacatgtgttctaataataacttttataattgatttttctgcgttgagat |
168 |
Q |
| |
|
|||||||||||||||||||||| || ||||||||||||||||| ||||||| |
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|
| T |
27540859 |
ggacatgtgttctaataataaccttcataattgatttttctgcattgagat |
27540809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 10526974 - 10526926
Alignment:
| Q |
203 |
tgaacacgtccgattttgaaaatgttaacataggtgatgaggttgtaaa |
251 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||||| |||||| |
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|
| T |
10526974 |
tgaacacgtctgattttgaaaatgttaacctaggtgatgaggctgtaaa |
10526926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 47 - 168
Target Start/End: Complemental strand, 46833207 - 46833083
Alignment:
| Q |
47 |
agtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacatggacatgtgttctaata---ataactttt |
143 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||| |||||||||||| ||||||||||||||| |||||||||| | |||||||| ||||| ||| |
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| T |
46833207 |
agtttagataaaaaaatggtgtctttttagagtttaaaaatgaatgcagttgatctaagtttcaaatacatggacatattttctaataattataaccttt |
46833108 |
T |
|
| Q |
144 |
ataattgatttttctgcgttgagat |
168 |
Q |
| |
|
|||||||||||||| | |||||||| |
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|
| T |
46833107 |
ataattgatttttccgtgttgagat |
46833083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 38 - 151
Target Start/End: Original strand, 45032127 - 45032240
Alignment:
| Q |
38 |
ttctttaaaagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacatggacatgtgttctaataata |
137 |
Q |
| |
|
|||||||| ||| ||||||| ||||| ||||||||| |||||||| ||||| ||||| | ||||||||||||||||||||||||||||| |||||| || |
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| T |
45032127 |
ttctttaagagtgtagatagtaaaattgtgtcttttaagagtttataaatgtatgcaacttatctaagtttcaaacacatggacatgtgtgctaatacta |
45032226 |
T |
|
| Q |
138 |
acttttataattga |
151 |
Q |
| |
|
|| ||| ||||||| |
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|
| T |
45032227 |
acctttgtaattga |
45032240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 38 - 132
Target Start/End: Original strand, 4357204 - 4357297
Alignment:
| Q |
38 |
ttctttaaaagtttagatagaaaaatagtgtctttttagagtttagaaatgaatgcagcagatctaagtttcaaacacatggacatgtgttctaa |
132 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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|
| T |
4357204 |
ttctttaagagtttagatataaaaaatgtgtcttta-agagtttggaaatgaatgcagctgatctaagtttaaaacacatggacatgtgttctaa |
4357297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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