View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12991_low_10 (Length: 596)
Name: NF12991_low_10
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_10 |
 | |
|
| [»] scaffold0002 (2 HSPs) |
| | |
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Alignment Details
Target: chr2 (Bit Score: 494; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 17 - 581
Target Start/End: Original strand, 42285463 - 42286032
Alignment:
| Q |
17 |
ttggcatatatgaaaatttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatc |
116 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
42285463 |
ttggcatatatgaaaatttaatgttggcagagaaacaattctcaaagcttgaagtgacaaaatcgcacgtaattaagtagtacgggcttgtatattgatc |
42285562 |
T |
|
| Q |
117 |
ttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggataaagataattagtgtctcaatatcctatatcctatga |
216 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
42285563 |
ttgataacaagtcgtgcaagaatttcccaatctatatatcttttatattttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctatga |
42285662 |
T |
|
| Q |
217 |
agaattgtgtcgtctctagcattatatgaattgtgttt-----tggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42285663 |
agaattgtgtcgtctctagcattatatgaattgtgtttgcatttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatg |
42285762 |
T |
|
| Q |
312 |
ctaacttggaaatttcttgttaccttgttttccaaaaattaaataaatgtgtggttcataattgctcaacatggcttacattggactatccacacatgac |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
42285763 |
ttaacttggaaatttcttgttaccttgttttccaaaaattaaataaatgtgtggttcataattgctcaacatggcttacattggactatgcacacatgac |
42285862 |
T |
|
| Q |
412 |
gagagtgtatgcattcataaggaaacacaatgatgacgatcaagaataataagtgataagtaaatcaaaatatatcaaatccacctaaaaacttctactt |
511 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
42285863 |
gagagtgtgtgcatttataaggaaacacaatgatgacgatcaagaataataagtgataagtaaatcaaaatatatcaaatccatctaaaaacttctactt |
42285962 |
T |
|
| Q |
512 |
ttaaaatccttaacttgtgccgttaagacataggttagcaagatcgatctaaaaatgcatgagtattttg |
581 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42285963 |
ttaaaatccttaacttgtgccgttagagcataggttagcaagatcgatctaaaaatgcatgagtattttg |
42286032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 42272429 - 42272814
Alignment:
| Q |
17 |
ttggcatatatgaaaatttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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|
| T |
42272429 |
ttggcatatatgaaaaattaaagttggcagagaaacaattctcaaagcttgaagtgacaaaatggcatgtaattaagtagtacgggcttgtatattgatc |
42272528 |
T |
|
| Q |
117 |
ttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggataaagataattagtgtctcaatatcctatatcctatga |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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|
| T |
42272529 |
ttgataacaagtcgtgcaaggatttcccaatctatatatcttttatattttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctatga |
42272628 |
T |
|
| Q |
217 |
agaattgtgtcgtctctagcattatatgaattgtgt-----tttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatg |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42272629 |
agaattgtgtcgtctctagcattatatgaattgtgtttgcgtttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatg |
42272728 |
T |
|
| Q |
312 |
ctaacttggaaatttcttgttaccttgttttccaaaaattaaataaatgtgtggttcataattgctcaacatggcttacattggac |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
42272729 |
ttaacttggaaatttcttgttaccttgttttccaagaattaaataattgtgtggttcataattgctctacatggcttacattggac |
42272814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 155 - 481
Target Start/End: Original strand, 42254870 - 42255202
Alignment:
| Q |
155 |
tcttttatatttt-aatcaatgggataaagataattagtgtctcaatatcctatatcctatgaagaattgtgtcgtctctagcattatatgaattgtgtt |
253 |
Q |
| |
|
||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| |
|
|
| T |
42254870 |
tcttttatatttttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctaggaagaattgtatcgtctctagcattatatgaatcgtgtt |
42254969 |
T |
|
| Q |
254 |
t-----tggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgctaacttggaaatttcttgttaccttgttttccaaaa |
348 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||||||| | | |
|
|
| T |
42254970 |
tgcgtttggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgttaacttggaaatttctagtttccttgttttcctaga |
42255069 |
T |
|
| Q |
349 |
attaaataaatgtgtggttcataattgctcaacatggcttacattggactatccacacatgacgagagtgtatgcattcataaggaaacacaatgatgac |
448 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||| ||||||||| |||||| ||||| ||||| |||||||||||||||||||||||| ||| |
|
|
| T |
42255070 |
attaaataaatgtgtggttcataatttctctacatggcttgaattggactacgcacacacgacgacagtgtctgcattcataaggaaacacaatgaagac |
42255169 |
T |
|
| Q |
449 |
gatcaagaataataagtgataagtaaatcaaaa |
481 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||| |
|
|
| T |
42255170 |
gttcaagaatgataagtgataaataaatcaaaa |
42255202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 157 - 481
Target Start/End: Original strand, 42281234 - 42281558
Alignment:
| Q |
157 |
ttttatattttaatcaatgggataaagataattagtgtctcaatatcctatatcctatgaagaattgtgtcgtctctagcattatatgaattgtgttt-- |
254 |
Q |
| |
|
||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
42281234 |
ttttatattttaatcaatgggatgaagacaattagtgtctcaatatcctatatcctaggaagaattgtatcgtctctagcattatatgaattgtgtttgc |
42281333 |
T |
|
| Q |
255 |
---tggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgctaacttggaaatttcttgttaccttgttttccaaaaatt |
351 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
42281334 |
gtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttaccatgtcaacttggaaatttcttgtgaccttgttttccaataatt |
42281432 |
T |
|
| Q |
352 |
aaataaatgtgtggttcataattgctcaacatggcttacattggactatccacacatgacgagagtgtatgcattcataaggaaacacaatgatgacgat |
451 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||||| ||||| |||||||||| | |||| ||||||||||||||||||||||||||||| | |
|
|
| T |
42281433 |
aaatt----tgtggttcataattgctctacatggcttacattgaactatgcacacatgacaacagtgcgtgcattcataaggaaacacaatgatgacgtt |
42281528 |
T |
|
| Q |
452 |
caagaataataagtgataagtaaatcaaaa |
481 |
Q |
| |
|
|||||| |||||||||||||||||||||| |
|
|
| T |
42281529 |
gaagaatgataagtgataagtaaatcaaaa |
42281558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 155 - 478
Target Start/End: Original strand, 42260390 - 42260727
Alignment:
| Q |
155 |
tcttttatattttaatcaatgggataaagataattagtgtctcaatatcctatatcctatgaagaattgtgtcgt-------ctctagcattatatgaat |
247 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
42260390 |
tcttttatattttaatcaatggatcgaagacaattagtgtctcaatatcctatatcctaggaagaattgtatcgtttctactctctagcattatatgaat |
42260489 |
T |
|
| Q |
248 |
tgtgttt-----tggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgct---aacttggaaatttcttgttaccttgt |
339 |
Q |
| |
|
|||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
42260490 |
agtgtttgcgtttggact-gattatatttttatttcttgctttatctttctagttttggttttaccatgttgttaacttggaaatttcttgttaccttgt |
42260588 |
T |
|
| Q |
340 |
tttccaaaaattaaataaatgtgtggttcataattgctcaacatggcttacattggactatccacacatgacgagagtgtatgcattcataaggaaacac |
439 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| | ||| |||||||||||||| | |||||||||| | | ||| | |||| |||||||| ||| |
|
|
| T |
42260589 |
tttccaggagttaaataaatgtgtggtttataattgttttgcattgcttacattggactctgcacacatgacaacaatgtgtacatttataaggaatcac |
42260688 |
T |
|
| Q |
440 |
aatgatgacgatcaagaataataagtgataagtaaatca |
478 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
42260689 |
aatgatgacgttcaagaatgataagtgataagtaaatca |
42260727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 216 - 329
Target Start/End: Original strand, 42269481 - 42269598
Alignment:
| Q |
216 |
aagaattgtgtcgtctctagcattatatgaattgtgttt-----tggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccat |
310 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
42269481 |
aagaattgtatcgtctctagcattatatgacttgcgtttgcgtttggact-gatcatatttttgtttcttgctttatctttctagttttggttttacaat |
42269579 |
T |
|
| Q |
311 |
gctaacttggaaatttctt |
329 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
42269580 |
gttaacttggaaaattctt |
42269598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 42259913 - 42260011
Alignment:
| Q |
32 |
atttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgt |
131 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
42259913 |
atttaaagctggcagagaaacaagtctcaaagcttgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaagttgt |
42260008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 44 - 134
Target Start/End: Original strand, 42280475 - 42280561
Alignment:
| Q |
44 |
cagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgtgca |
134 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
42280475 |
cagagaaacaatcctcaaagcttgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaagttgtgca |
42280561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 44 - 127
Target Start/End: Original strand, 42313590 - 42313669
Alignment:
| Q |
44 |
cagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaag |
127 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||| || |||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
42313590 |
cagagaaacaattcccaaagcatgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaag |
42313669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 155 - 478
Target Start/End: Original strand, 489225 - 489562
Alignment:
| Q |
155 |
tcttttatattttaatcaatgggataaagataattagtgtctcaatatcctatatcctatgaagaattgtgtcgt-------ctctagcattatatgaat |
247 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||| |
|
|
| T |
489225 |
tcttttatattttaatcaatggatcgaagacaattagtgtctcaatatcctatatcctaggaagaattgtatcgtttctactctctagcattatatgaat |
489324 |
T |
|
| Q |
248 |
tgtgttt-----tggacttgatcatatttttgtttcttgctttatctttctagttttggttttaccatgct---aacttggaaatttcttgttaccttgt |
339 |
Q |
| |
|
|||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
489325 |
agtgtttgcgtttggact-gattatatttttatttcttgctttatctttctagttttggttttaccatgttgttaacttggaaatttcttgttaccttgt |
489423 |
T |
|
| Q |
340 |
tttccaaaaattaaataaatgtgtggttcataattgctcaacatggcttacattggactatccacacatgacgagagtgtatgcattcataaggaaacac |
439 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| | ||| |||||||||||||| | |||||||||| | | ||| | |||| |||||||| ||| |
|
|
| T |
489424 |
tttccaggagttaaataaatgtgtggtttataattgttttgcattgcttacattggactctgcacacatgacaacaatgtgtacatttataaggaatcac |
489523 |
T |
|
| Q |
440 |
aatgatgacgatcaagaataataagtgataagtaaatca |
478 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
489524 |
aatgatgacgttcaagaatgataagtgataagtaaatca |
489562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 32 - 134
Target Start/End: Original strand, 488748 - 488846
Alignment:
| Q |
32 |
atttaaagttgtcagagaaacaattctcaaagcttgaagtgacaaaattgcacgtaattaagtagtacgggcttgtatattgatcttgataacaagtcgt |
131 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||||||||||||| ||| || |||| |||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
488748 |
atttaaagctggcagagaaacaagtctcaaagcttgaagtgacagaatcacatgtaa----gtagtaagggcttgtatattgatcttgataacaagttgt |
488843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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