View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_12 (Length: 574)
Name: NF12991_low_12
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 555
Target Start/End: Original strand, 34228886 - 34229433
Alignment:
| Q |
1 |
aagatactttcttcacacatattttttcttgaagctgacattagtcacagccctagttatgcctagagtagtatttggaatactagatatgtgattttac |
100 |
Q |
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| T |
34228886 |
aagatactttcttcacacatattttttcttgaagctgacattagtcacagccctagttatgcctagcgtagtatttggaatactagatatgtgattttac |
34228985 |
T |
|
| Q |
101 |
atggttgtagatggcggattggtgatggtagtaatgttagaatcatgatggattcattgctcaaaggagacaaaggaaaatggttgcaatcacaccaaaa |
200 |
Q |
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| T |
34228986 |
atggttgtagatggcggattggtgatggtagtaatgttagaatcatgatggattcattgctcagaggagacaaaggaaaatggctgcaatcacaccaaaa |
34229085 |
T |
|
| Q |
201 |
ccaaggtgtgtataacatgcatgttaatcaattgatagtaattggggagagacattgggatattgacatttgacaaagttcataattttcacagatgaaa |
300 |
Q |
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| T |
34229086 |
ccaaggtgtgtttaacatgcatgctaatcaattgatagtaattggagagagacattgggata-------ttgacaaagttcataattttcacagatgaaa |
34229178 |
T |
|
| Q |
301 |
ctgcaaactgtatactctattttcgttgtccctttaattcattcgctgtatgaggataagttggtttgggatgaggatcgaaatagttgctatttgatta |
400 |
Q |
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| T |
34229179 |
ctgcaaactgtatactctattttcgctgtccctttatttcattcgctgcatgaggataagttggtttgggatgaggatcgaaatagttgttatttgatta |
34229278 |
T |
|
| Q |
401 |
agtcggggtataaactgataagttggtttggttgtccaacttcatgttgatgttgactgaaatgatttgcggagtgtttacgccccacagaaggcgagtc |
500 |
Q |
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| T |
34229279 |
agtcggggtataatctgataagttggtttggttgtccaactatatgttgatgttgactgaaatgatttgtggagtgtttaggccccaccgaaggcccgtc |
34229378 |
T |
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| Q |
501 |
atttgttatggagaatttgtcgaggctgcattccgactcgtccacgtttgtaact |
555 |
Q |
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| T |
34229379 |
atttgatatggagaacttttcgaggctgcattccgactcgtccacgtttataact |
34229433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 70 - 147
Target Start/End: Complemental strand, 46889177 - 46889100
Alignment:
| Q |
70 |
agtatttggaatactagatatgtgattttacatggttgtagatggcggattggtgatggtagtaatgttagaatcatg |
147 |
Q |
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| T |
46889177 |
agtatttggaattctagacatgtgttttcacatgcttgtagatggaggattggtgatggtaagaatgttagaatcatg |
46889100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 95 - 129
Target Start/End: Original strand, 42093100 - 42093134
Alignment:
| Q |
95 |
ttttacatggttgtagatggcggattggtgatggt |
129 |
Q |
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| T |
42093100 |
ttttacatggttgtagatggaggattggtgatggt |
42093134 |
T |
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