View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12991_low_13 (Length: 515)
Name: NF12991_low_13
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_13 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 507
Target Start/End: Original strand, 6224464 - 6224952
Alignment:
| Q |
19 |
caccaaatgagattatcataatccaagtcaacaacaaagcttaaaaataaataatggaccacacataagtaaaacaagttttcaattccaacaaatatac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6224464 |
caccaaatgagattatcataatccaagtcaacaacaaagcttaaaaataaataatggaccacacataagtaaaacaagttttcaattccaacaaatatac |
6224563 |
T |
|
| Q |
119 |
gatgtttgataatatacctggtctcttgtgtaggaatgtatggttgtcatggatcccttaacaattcctggaaatatagaccaacgataattaagtggct |
218 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
6224564 |
gatgtttgataatatacgtggtctcttgtgtaggaatgtatggttgtcatggtttccttaacaattcatggaaatatagaccaacgataattaagtggct |
6224663 |
T |
|
| Q |
219 |
ttaagctaggaatcaaatgttgttgttacaatactagctatcaatatgatgagtatcagaacttttgcttagcgaattcttcatccaggatcttcacaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6224664 |
ttaagctaggaatcaaatgttgttgttacaatactagctatcaatatgatgagtattagaacttttgcttagcgaattcttcatccaggatcttcacaaa |
6224763 |
T |
|
| Q |
319 |
gggagcaacacagtttgtggtgcaagaagcattgttgtacattaagaaacataggaatgaatatgaataatcaataaaaacacgacactatcttgtattg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
6224764 |
gggagcaacacagtttgtggtgcaagaagcattgctgtacattaagaaacataggaatgaatatgaataatcaataaaaacacgacactatcttgcattg |
6224863 |
T |
|
| Q |
419 |
acattctcagctgtgataccgttgttctcaacctcaacattcgcaatgaggtcaacaacttaaataataaagccttacctgatgatgtc |
507 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
6224864 |
acattctcaactatgataccgttgttctcaacctcaacattcgcaatgaggtcaacaacttaaataataaagccttaccttatgatgtc |
6224952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 161 - 294
Target Start/End: Complemental strand, 28247260 - 28247127
Alignment:
| Q |
161 |
gttgtcatggatcccttaacaattcctggaaatatagaccaacgataattaagtggctttaagctaggaatcaaatgttgttgttacaatactagctatc |
260 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
28247260 |
gttgtcatggttcccttaaaaattcctggaaatatagaccaaagataattaagtggctttgagctaggaatcaaatgttgctgttacaatactagatatc |
28247161 |
T |
|
| Q |
261 |
aatatgatgagtatcagaacttttgcttagcgaa |
294 |
Q |
| |
|
| ||||||||||||||||| ||||||||| |||| |
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|
| T |
28247160 |
agtatgatgagtatcagaatttttgcttaccgaa |
28247127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 28247444 - 28247394
Alignment:
| Q |
19 |
caccaaatgagattatcataatccaagtcaacaacaaagcttaaaaataaa |
69 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
28247444 |
caccaaatgagattatcatagtccaagtcaacaaaaaagcttaaaaataaa |
28247394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 73 - 506
Target Start/End: Original strand, 19748475 - 19748908
Alignment:
| Q |
73 |
tggaccacacataagtaaaacaagttttcaattccaacaaatatacgatgtttgataatatacctggtctcttgtgtaggaatgtatggttgtcatggat |
172 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||| | |
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|
| T |
19748475 |
tggaccacacataagtaaaacaagttttcaattccaacaaatatatgatgtttgataatatacctggtctcatgtgtaggaatgtgtggttgtcatggtt |
19748574 |
T |
|
| Q |
173 |
cccttaacaattcctggaaatatagaccaacgataattaagtggctttaagctaggaatcaaatgttgttgttacaatactagctatcaatatgatgagt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
19748575 |
cccttaacaattcctggaaatatagaccaaagataattaggtggctttgagctaggaatcaaatgttgttgttacaatactagctatcagtatgatgagt |
19748674 |
T |
|
| Q |
273 |
atcagaacttttgcttagcgaattcttcatccaggatcttcacaaagggagcaacacagtttgtggtgcaagaagcattgttgtacattaagaaacatag |
372 |
Q |
| |
|
|||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19748675 |
atcaaaatttttgcttaccgaattcttcatccaggatcttcacaaagggagcaagacagtttgtggtgcaagaagcattgttgtacattaagaaacataa |
19748774 |
T |
|
| Q |
373 |
gaatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgcaatgaggtca |
472 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| ||||||||| ||||| |||||||||||||| |||| ||||||| |
|
|
| T |
19748775 |
gaatgaatatgaataatcaatcaaaacacaacactatcttgcattgacattctcagttgtgatacccttgttttcaacctcaacatttgcaacgaggtca |
19748874 |
T |
|
| Q |
473 |
acaacttaaataataaagccttacctgatgatgt |
506 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||||| |
|
|
| T |
19748875 |
acaacttaaatattaaaaccttaccttatgatgt |
19748908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 63 - 507
Target Start/End: Original strand, 54181943 - 54182386
Alignment:
| Q |
63 |
aaataaataatggaccacacataagtaaaacaagttttcaattccaacaaatatacgatgtttgataatatacctggtctcttgtgtaggaatgtatggt |
162 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
54181943 |
aaataaatattggaccacacatacgtaaaacaagttttcaattccaacaaacatatgatgtttgataatatacctggtctcctgtgtaggaatgtgtggt |
54182042 |
T |
|
| Q |
163 |
tgtcatggatcccttaacaattcctggaaatatagaccaacgataattaagtggctttaagctaggaatcaaatgttgttgttacaatactagctatcaa |
262 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54182043 |
tgtcatggttcccttaacaattcctggaaatatagaccaaagatgattaagtggctttgagctaggaatcaaatgttgctgttacaatactagctatcag |
54182142 |
T |
|
| Q |
263 |
tatgatgagtatcagaacttttgcttagcgaattcttcatccaggatcttcacaaagggagcaacacagtttgtggtgcaagaagcattgttgtacatta |
362 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
54182143 |
tatgatgagtatcagaatatttgcttaccgaattcttcatccaggatcttcacaaagggagcaagacagtttgtggtgcaagaagcattgctgtacatta |
54182242 |
T |
|
| Q |
363 |
agaaacataggaatgaatatgaataatcaataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgc |
462 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
54182243 |
agaaacataagaacgaatatgaataatcaatcaaaacacaacactatcttgtattgacattctcagctgtgatacccttgttctcaacctcaacatccgc |
54182342 |
T |
|
| Q |
463 |
aatgaggtcaacaacttaaataataaagccttacctgatgatgtc |
507 |
Q |
| |
|
|| |||||||||||||||||| || ||||||||||| |||||||| |
|
|
| T |
54182343 |
aacgaggtcaacaacttaaat-attaagccttaccttatgatgtc |
54182386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 191 - 507
Target Start/End: Complemental strand, 5076759 - 5076444
Alignment:
| Q |
191 |
aatatagaccaacgataattaagtggctttaagctaggaatcaaatgttgttgttacaatactagctatcaatatgatgagtatcagaacttttgcttag |
290 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
5076759 |
aatatagaccaaagataattaagtggctttgagctaggaatcaaatgttgttgttacaatactagctatcagtatgatgagtatcagaatttttgcttac |
5076660 |
T |
|
| Q |
291 |
cgaattcttcatccaggatcttcacaaagggagcaacacagtttgtggtgcaagaagcattgttgtacattaagaaacataggaatgaatatgaataatc |
390 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| |||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
5076659 |
cgaatttttcatccaggatcttcacacagggagcaagacagtttgcggtgcaggaagcattgttgtacattaagaaacataaaaatgaatatgaat-atc |
5076561 |
T |
|
| Q |
391 |
aataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgcaatgaggtcaacaacttaaataataaag |
490 |
Q |
| |
|
||| ||||||| || ||||||| |||||||||||||| ||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
5076560 |
aatcaaaacacatcattatcttgcattgacattctcagttgtgatacccttgttctcaacctcaacattcacaacgaggtcaacaacttaaatattaaag |
5076461 |
T |
|
| Q |
491 |
ccttacctgatgatgtc |
507 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
5076460 |
ccttaccttatgatgtc |
5076444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 191 - 507
Target Start/End: Original strand, 7412466 - 7412781
Alignment:
| Q |
191 |
aatatagaccaacgataattaagtggctttaagctaggaatcaaatgttgttgttacaatactagctatcaatatgatgagtatcagaacttttgcttag |
290 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||||| || ||||||||| |
|
|
| T |
7412466 |
aatatagaccaaagataattaagtggctttgagctaggaatcaaatgttgctgttacaatactagctatcagtatgatgagtatcataatttttgcttac |
7412565 |
T |
|
| Q |
291 |
cgaattcttcatccaggatcttcacaaagggagcaacacagtttgtggtgcaagaagcattgttgtacattaagaaacataggaatgaatatgaataatc |
390 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||||||| |||||||| |||| | ||| ||||| |||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
7412566 |
cgaatttttcatccaggatcttcacacagggagcaagacagtttgcggtgtaggaaacattgctgtacattaagaaacataagaatgaatatgaat-atc |
7412664 |
T |
|
| Q |
391 |
aataaaaacacgacactatcttgtattgacattctcagctgtgataccgttgttctcaacctcaacattcgcaatgaggtcaacaacttaaataataaag |
490 |
Q |
| |
|
||| ||||||| |||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||| ||||| ||||||||||||||||||| ||||| |
|
|
| T |
7412665 |
aatcaaaacacagcactatcttgcattgacattctcatttgtgatacccttgctctcaacctcaacatccgcaacgaggtcaacaacttaaatattaaag |
7412764 |
T |
|
| Q |
491 |
ccttacctgatgatgtc |
507 |
Q |
| |
|
||| |||| |||||||| |
|
|
| T |
7412765 |
cctaaccttatgatgtc |
7412781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 37743927 - 37743878
Alignment:
| Q |
20 |
accaaatgagattatcataatccaagtcaacaacaaagcttaaaaataaa |
69 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| |||||||||||||||| |
|
|
| T |
37743927 |
accaaatgagattatcatagttcaagtcaacaaaaaagcttaaaaataaa |
37743878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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