View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_15 (Length: 467)
Name: NF12991_low_15
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 44643454 - 44643917
Alignment:
| Q |
1 |
tgaaagatatcttcatgtcttcttgtacttgattctccattgattcttctttattcatgtactataatttcagagggacatcgaaacagtggcaaaacaa |
100 |
Q |
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| T |
44643454 |
tgaaagatatcttcatgtcttcttgtacttgattctccattgattcttctttattcgtgtactataatttcagagggacatcgaaacggtggcaaaacaa |
44643553 |
T |
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| Q |
101 |
caaacagatgaatgaatagcaacaatttattatttttaaaaacataaagcactagtgaaaacgaaggtggttagttttgtaatgtattcaaagacaattg |
200 |
Q |
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| T |
44643554 |
caaacagatgaatgaatagcaacaatttattatttttaaaaacataaagcactagtgaaaacgaaggtggttagttttgtaatgtattcaaagacaattg |
44643653 |
T |
|
| Q |
201 |
tttgccaaattaaaactttgttggcttgtcccttcgatgacatcggataaaattagaacgatacaaagaaaactttgttagcttattatgggatatatgc |
300 |
Q |
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| T |
44643654 |
tttgccaaattaaaactttgttggcttgtcccttcgaggacatcagataaatttagaacgatacaaagaaaactttgttagcttattatgggatatatgc |
44643753 |
T |
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| Q |
301 |
tcataagagcgaagtagatcttgtagggatcaatcttcttacattatttcatttttatcctccatctgttctataataacaatcacattatttgtaaaag |
400 |
Q |
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| T |
44643754 |
tcataagagcgaagtagatcttgtagggatcgatcttcttacattatttcatttttatcctccatctgtttcataataacaatcac---atttgtaaaag |
44643850 |
T |
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| Q |
401 |
aaaattgtcctagaagagtgacacttttcagatcttgctaacgaagggaagtgaatattatgtgata |
467 |
Q |
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| T |
44643851 |
aaaattgtcctagaagagtgacacttttcagatcttgctaatgaagggaagtgaatattatgtgata |
44643917 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 41812155 - 41812203
Alignment:
| Q |
222 |
tggcttgtcccttcgatgacatcggataaaattagaacgatacaaagaa |
270 |
Q |
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| T |
41812155 |
tggcttgtcccttcggggacatccgataaaattggaacgatacagagaa |
41812203 |
T |
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