View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_16 (Length: 464)
Name: NF12991_low_16
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 77 - 280
Target Start/End: Original strand, 1272982 - 1273180
Alignment:
| Q |
77 |
ttgctgttgtcagtgtaacaaacacgtgttacataaacatgacaacaaagtgaaaataatcaaacctcaaaaaagtgttggaggattttggattggagtg |
176 |
Q |
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| T |
1272982 |
ttgctgttgtcagtgtaacaaacacgtgttacataaacatgacaacaaagtgaaaataatcaaacctcaaaaaagtgttggaggattttggattgg---- |
1273077 |
T |
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| Q |
177 |
tagtgtagtgtgtgtgcaagtgatagatgcaccaactttcatatcatatgtagtccaacctttacttcatgcaaccatagtatatacactgttatattcc |
276 |
Q |
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| T |
1273078 |
-agtgtagtgtgtgtgcaagtgatagatgcaccaactttcatatcatatgtagtccaacctttacttcatgcaaccatagtatatacactgttatattcc |
1273176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 346 - 446
Target Start/End: Original strand, 1273247 - 1273347
Alignment:
| Q |
346 |
ccatacatgtagaatataggtaacgaaagagacattgatcattcttggttgatatatagttataatcattataattttataacatattttgacctctatg |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1273247 |
ccatacatgtagaatataggtaacgaaagagacattgatcattcttggttgatatatagttataatcatcataattttataacatattttgacctctatg |
1273346 |
T |
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| Q |
446 |
t |
446 |
Q |
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| T |
1273347 |
t |
1273347 |
T |
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