View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12991_low_18 (Length: 458)
Name: NF12991_low_18
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_18 |
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Alignment Details
Target: chr5 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 439
Target Start/End: Original strand, 18664264 - 18664690
Alignment:
| Q |
13 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664264 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
18664363 |
T |
|
| Q |
113 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18664364 |
tcttctgcaaacccattcttagcgagctgctttatcataatacatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta |
18664463 |
T |
|
| Q |
213 |
cagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaacatatatgtgtacaacttttgcctc |
312 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| |||||||||||||||| ||||||||||||||||||| |
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| T |
18664464 |
cagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctc |
18664563 |
T |
|
| Q |
313 |
ttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttttctaactcttgcaaaacagcaatt |
412 |
Q |
| |
|
||||||| ||| | ||| ||||| |||||||||||||||||||| ||| |||||| ||| | |||||| |||||||||| ||||||||||| ||||| |
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|
| T |
18664564 |
ttcaagagacttggtcttcccacattgttgcattaatcgcaaacaacgatccaaatctacaagaatatgaaacttttctaacacttgcaaaacatcaatt |
18664663 |
T |
|
| Q |
413 |
gctttcttcacttcaccctccttgcaa |
439 |
Q |
| |
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|||| |||||||||||||||| ||||| |
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|
| T |
18664664 |
gcttccttcacttcaccctccatgcaa |
18664690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 180 - 440
Target Start/End: Original strand, 18664731 - 18664991
Alignment:
| Q |
180 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg |
279 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
18664731 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacaaatg |
18664830 |
T |
|
| Q |
280 |
ttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagta |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18664831 |
ttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagta |
18664930 |
T |
|
| Q |
380 |
tgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18664931 |
tgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
18664991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 439
Target Start/End: Complemental strand, 15079564 - 15079138
Alignment:
| Q |
13 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15079564 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
15079465 |
T |
|
| Q |
113 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
15079464 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgttcattcatgttcttgaatacgttgactgcatcatcta |
15079365 |
T |
|
| Q |
213 |
cagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaacatatatgtgtacaacttttgcctc |
312 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| | ||||||||| ||| | |||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15079364 |
cagaaccacattgaaaatacatctccaatattccattgcatgtgctgactttaagaggtgacaaatgttgtaaaacatatctgtgtacaacttttgcctc |
15079265 |
T |
|
| Q |
313 |
ttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttttctaactcttgcaaaacagcaatt |
412 |
Q |
| |
|
||||||| ||| | ||| ||||| |||||||||||| ||||||| ||| |||||| |||| | |||||| |||||||||| ||||||||||| ||||| |
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|
| T |
15079264 |
ttcaagagacttggtcttcccacattgttgcattaatctcaaacaacgatccaaatctacatgaatatgaaacttttctaacacttgcaaaacatcaatt |
15079165 |
T |
|
| Q |
413 |
gctttcttcacttcaccctccttgcaa |
439 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
15079164 |
gcttccttcacttcaccctccatgcaa |
15079138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 180 - 440
Target Start/End: Complemental strand, 15079097 - 15078837
Alignment:
| Q |
180 |
tcatgttcttgaatacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatg |
279 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
15079097 |
tcatgttcctgaacacgttgactgcatcatctacagaaccacattgaaaatacatctctaatattctaatgcatgtgcggactgtgagaggtgacaaatg |
15078998 |
T |
|
| Q |
280 |
ttgtaaaacatatatgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagta |
379 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15078997 |
ttgtaaaacatatctgtgtacaacttttgcctcttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagta |
15078898 |
T |
|
| Q |
380 |
tgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
440 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
15078897 |
tgaagcttttctaactcttgcaaaacagcaattgctttcttcacttcaccctccttgcaaa |
15078837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 7449275 - 7449703
Alignment:
| Q |
13 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
7449275 |
aatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaa |
7449374 |
T |
|
| Q |
113 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta |
212 |
Q |
| |
|
||||||||||| |||||||| |||| ||| |||||||| ||| ||||||||||||| ||||| |||| ||||||| |||| || ||||||||||| |
|
|
| T |
7449375 |
tcttctgcaaaaccattcttgacgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatcta |
7449474 |
T |
|
| Q |
213 |
cagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaacatatatgtgtacaacttttgcctc |
312 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| || ||||| ||| || ||||| || |||||| ||| ||| | ||||||||||| ||||||| |
|
|
| T |
7449475 |
gagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctc |
7449574 |
T |
|
| Q |
313 |
ttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttttctaactcttgcaaaacagcaatt |
412 |
Q |
| |
|
|||||| ||| |||||| ||||| | |||||||| |||||||| | | ||||||||||| | ||||||||||||| |||| ||||||| ||| | |
|
|
| T |
7449575 |
ctcaagagacttagccttcccacaaatgcgcattaattgcaaacaacgctgcaaatccacatgaatatgaagcttttccaacttttgcaaattttcaact |
7449674 |
T |
|
| Q |
413 |
gctttcttcacttcaccctccttgcaaaa |
441 |
Q |
| |
|
|||| |||||||| ||| ||| ||||||| |
|
|
| T |
7449675 |
gcttccttcactttaccatccctgcaaaa |
7449703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 7534813 - 7535204
Alignment:
| Q |
13 |
aatatctcccaacatactacatgcaccaaaaaccccaataaacatttggccatcaggttttagtcctgaccttttaaattgagtaaataaatcaattgaa |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
7534813 |
aatatctcccaacatactacatgcaccaaaaactccaataaacatttggccatcaggttttagtcccatgtttttaaattgagtaaatatatcaattgaa |
7534912 |
T |
|
| Q |
113 |
tcttctgcaaacccattcttagcgagctgctttatcataatatatatagtagtcaaatcgcgctcagtcatgttcttgaatacgttgactgcatcatcta |
212 |
Q |
| |
|
||||||| |||||||||||| ||||| ||| |||||||| ||| ||||||||||||| ||||| |||| ||||||| |||| || ||||||||||| |
|
|
| T |
7534913 |
tcttctggaaacccattcttggcgagttgcattatcatagtatgccaagtagtcaaatcgtactcaggcatgctcttgaacacgtcgattgcatcatcta |
7535012 |
T |
|
| Q |
213 |
cagaaccacattgaaaatacatctctaatattctaatgcatgtgcgaactgtgagaggtgacagatgttgtaaaacatatatgtgtacaacttttgcctc |
312 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||| || ||||| ||| || ||||| || |||||| ||| ||| | ||||||||||| ||||||| |
|
|
| T |
7535013 |
gagaaccacattcaaaatacatctccaatactctattgtctgtgctaaccgtaagaggatgcaaatgttgcaaagcatgtctgtgtacaactcttgcctc |
7535112 |
T |
|
| Q |
313 |
ttcaagaaactcagcctttccacacagttgcattaatcgcaaacaaagatacaaatccacataagtatgaagcttttctaactcttgcaaaa |
404 |
Q |
| |
|
||||||| ||| || ||| ||||| | ||||||||| |||||||| | | |||||||| || | ||| ||||||||| ||| ||||||||| |
|
|
| T |
7535113 |
ttcaagagacttagtcttcccacaaacgtgcattaattgcaaacaacgctgcaaatccatatgaatataaagcttttccaacacttgcaaaa |
7535204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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