View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_low_2 (Length: 835)

Name: NF12991_low_2
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_low_2
NF12991_low_2
[»] chr4 (12 HSPs)
chr4 (401-705)||(23267907-23268228)
chr4 (146-342)||(23267637-23267832)
chr4 (717-835)||(23268275-23268392)
chr4 (515-701)||(27542244-27542438)
chr4 (745-833)||(27542496-27542584)
chr4 (716-833)||(23257823-23257943)
chr4 (716-833)||(23275701-23275821)
chr4 (474-636)||(11137300-11137461)
chr4 (519-639)||(23257579-23257697)
chr4 (519-639)||(23275457-23275575)
chr4 (716-781)||(11137103-11137168)
chr4 (19-54)||(23254286-23254321)
[»] chr5 (1 HSPs)
chr5 (594-638)||(8984324-8984368)


Alignment Details
Target: chr4 (Bit Score: 153; Significance: 1e-80; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 401 - 705
Target Start/End: Original strand, 23267907 - 23268228
Alignment:
Q  401 tcatcgatctacttgtgtttaatttctatgaacttttctgtgtaaactacttcaatannnnnnn-agattctttaatttgaagttcctgaatttcccaac 499  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||    
T  23267907 tcatcgatctgcttgtgtttaatttctatgaacttgtctgtgtaaactacttcaatattatttttagattctttaatttgaagttcctgaatttcccaac 23268006  T
Q  500 atctatg--agtcaaaaaatgtttcccaacattttgagtcaaaaaagattttcccatcatttaggctaatcatgaaaaagatatc-tcaaaa-acgttgc 595  Q
    |||| |   ||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||| |||||||||||||||| || |||||| |||||||    
T  23268007 atctttttaagtcaaaaaatgtttccca-cattttgagtcaaaaaagagtttcccaacatttaggttaatcatgaaaaagatgtcgtcaaaaaacgttgc 23268105  T
Q  596 tatgactgcataacaattagcctagatgcagagaaattaaa------ctaattcaaagaatgtgagaat-------ccnnnnnnngctttgaattcaagc 682  Q
    ||||| |||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||       ||       |||||||||||||||    
T  23268106 tatgaatgcataacaattagcctagatgcagagaaattaaaatactgctaattcaaagaatgtgagaatccaaagaccaaaaagagctttgaattcaagc 23268205  T
Q  683 ccatgtgaaatcaatcgtcccaa 705  Q
    |||||||||||||||||||||||    
T  23268206 ccatgtgaaatcaatcgtcccaa 23268228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 146 - 342
Target Start/End: Original strand, 23267637 - 23267832
Alignment:
Q  146 ttgaccaaccttggaattagaatttcgtttatccctttatttaggaggccaacaaggagcaattaccaagcagaggatatgtgatcctagcatcccgtca 245  Q
    |||||||||| |  |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  23267637 ttgaccaaccctacaattagaagttcgtttatccctttatttaggaggccaacaaagagcaattaccaagcagaggatatgtgatcctagcatcccgcca 23267736  T
Q  246 aggagattatcatggcaaatagaaagagatgtgaagaagatctccaaagaaaactgttaattgcttgatgaaggaaaatgaatgaaaaatggaatta 342  Q
    |||||||||||||||  || |||||||||||||   ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  23267737 aggagattatcatgg-taacagaaagagatgtgggaaagctctccaaagaaaactgttcattgcttgatgaaggaaaataaatgaaaaatggaatta 23267832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 3e-41
Query Start/End: Original strand, 717 - 835
Target Start/End: Original strand, 23268275 - 23268392
Alignment:
Q  717 tcattaagcaaaaattgcatccaataggaagaaaaataactatatctaagacagcaatataaagattaaagacaggtcaaaatagaggtcatccccaaaa 816  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  23268275 tcattaagcaaaaattgtatcca-taggaagaaaaataactatatataaggcagcaatataaatattaaagacagatcaaaagagaggtcatccccaaaa 23268373  T
Q  817 ataaattgaggcaatcatt 835  Q
    |||||||||||||||||||    
T  23268374 ataaattgaggcaatcatt 23268392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 515 - 701
Target Start/End: Original strand, 27542244 - 27542438
Alignment:
Q  515 aatgtttcccaacattttgagtcaaaaaagattttcccatcatttaggctaatcatg-aaaaagatatc-tcaaaaacgttgctatgactgcataacaat 612  Q
    |||||||||||||||||| |||||||||||| ||||  | ||||||||||||||||  |||||||| || |||||||||||||||||| |||||||||||    
T  27542244 aatgtttcccaacatttttagtcaaaaaagagtttctgaacatttaggctaatcatctaaaaagatgtcgtcaaaaacgttgctatgaatgcataacaat 27542343  T
Q  613 tagcctagatgcagagaaattaaa--------ctaattcaaagaatgtgagaatccnnnnnnngctttgaattcaagcccatgtgaaatcaatcgtc 701  Q
    ||||||||||||||||||||||||        ||||||||||||||||  ||||||       |||||||||||||| ||||||||||||| |||||    
T  27542344 tagcctagatgcagagaaattaaactactctgctaattcaaagaatgt--gaatccaaaaagagctttgaattcaagtccatgtgaaatcattcgtc 27542438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 745 - 833
Target Start/End: Original strand, 27542496 - 27542584
Alignment:
Q  745 aagaaaaataactatatctaagacagcaatataaagattaaagacaggtcaaaatagaggtcatccccaaaaataaattgaggcaatca 833  Q
    |||||| ||||||||||||||| || ||||||||| ||||||||||| |||||||||||||||||||||||||  ||||||||||||||    
T  27542496 aagaaatataactatatctaaggcatcaatataaatattaaagacagatcaaaatagaggtcatccccaaaaaccaattgaggcaatca 27542584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 716 - 833
Target Start/End: Original strand, 23257823 - 23257943
Alignment:
Q  716 ttcattaagcaaaaattgcatccaataggaagaaaaataactatatc---taagacagcaatataaagattaaagacaggtcaaaatagaggtcatcccc 812  Q
    ||||||| |||||||||| |||  |||| |||||||||||||||||    ||||||| |||| |||| |||||| |||| ||||||||||||||||||||    
T  23257823 ttcattatgcaaaaattgtatcttatagaaagaaaaataactatatactataagacaacaatctaaatattaaacacagatcaaaatagaggtcatcccc 23257922  T
Q  813 aaaaataaattgaggcaatca 833  Q
    |||||| |||||| |||||||    
T  23257923 aaaaatcaattgaagcaatca 23257943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 716 - 833
Target Start/End: Original strand, 23275701 - 23275821
Alignment:
Q  716 ttcattaagcaaaaattgcatccaataggaagaaaaataactatatc---taagacagcaatataaagattaaagacaggtcaaaatagaggtcatcccc 812  Q
    ||||||| |||||||||| |||  |||| |||||||||||||||||    ||||||| |||| |||| |||||| |||| ||||||||||||||||||||    
T  23275701 ttcattatgcaaaaattgtatcttatagaaagaaaaataactatatactataagacaacaatctaaatattaaacacagatcaaaatagaggtcatcccc 23275800  T
Q  813 aaaaataaattgaggcaatca 833  Q
    |||||| |||||| |||||||    
T  23275801 aaaaatcaattgaagcaatca 23275821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 474 - 636
Target Start/End: Complemental strand, 11137461 - 11137300
Alignment:
Q  474 aatttgaagttcctgaatttcccaacatctatgagtcaaa--aaatgtttcccaacattttgagtcaaaaaagattttcccatcatttaggctaatcatg 571  Q
    |||||||||||||||||||||||||||| |   |||||||  ||| |||||||||||||||||||||||||| | ||||||| ||||||  | |||||||    
T  11137461 aatttgaagttcctgaatttcccaacatttt--agtcaaagaaaaagtttcccaacattttgagtcaaaaaacagtttcccaacatttactc-aatcatg 11137365  T
Q  572 aaaaagatat-ctcaaaaacgttgctatgactgcataacaattagcctagatgcagagaaattaaa 636  Q
    ||||||| ||  || ||||||||||||  | ||||| ||||||| ||| ||| | |||||||||||    
T  11137364 aaaaagacatggtcgaaaacgttgctacaaatgcatcacaattaacct-gatactgagaaattaaa 11137300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 639
Target Start/End: Original strand, 23257579 - 23257697
Alignment:
Q  519 tttcccaacattttgagtcaaaaaagattttcccatcatttaggctaatcatgaaaaagatatc-tcaaaaacgttgctatgactgcataacaattagcc 617  Q
    ||||||||||||||||||||||   || ||||||| |||||||||||||| ||||||||| ||  ||||| || |||| |||  ||||  ||||||||||    
T  23257579 tttcccaacattttgagtcaaa---gagtttcccagcatttaggctaatcttgaaaaagacattgtcaaacacattgccatggatgcaccacaattagcc 23257675  T
Q  618 tagatgcagagaaattaaacta 639  Q
    || |||||||||||||||||||    
T  23257676 taaatgcagagaaattaaacta 23257697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 639
Target Start/End: Original strand, 23275457 - 23275575
Alignment:
Q  519 tttcccaacattttgagtcaaaaaagattttcccatcatttaggctaatcatgaaaaagatatc-tcaaaaacgttgctatgactgcataacaattagcc 617  Q
    ||||||||||||||||||||||   || ||||||| |||||||||||||| ||||||||| ||  ||||| || |||| |||  ||||  ||||||||||    
T  23275457 tttcccaacattttgagtcaaa---gagtttcccagcatttaggctaatcttgaaaaagacattgtcaaacacattgccatggatgcaccacaattagcc 23275553  T
Q  618 tagatgcagagaaattaaacta 639  Q
    || |||||||||||||||||||    
T  23275554 taaatgcagagaaattaaacta 23275575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 716 - 781
Target Start/End: Complemental strand, 11137168 - 11137103
Alignment:
Q  716 ttcattaagcaaaaattgcatccaataggaagaaaaataactatatctaagacagcaatataaaga 781  Q
    ||||||| ||||||||||||||  ||||  |||||||||||||||| |||| ||||||||||||||    
T  11137168 ttcattatgcaaaaattgcatcttatagacagaaaaataactatatataaggcagcaatataaaga 11137103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 23254286 - 23254321
Alignment:
Q  19 tagagaaattaatcgaggcttccgagatcaattata 54  Q
    |||||||||||||| |||||||||||||||||||||    
T  23254286 tagagaaattaatcaaggcttccgagatcaattata 23254321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 594 - 638
Target Start/End: Original strand, 8984324 - 8984368
Alignment:
Q  594 gctatgactgcataacaattagcctagatgcagagaaattaaact 638  Q
    ||||||| ||||| || ||||||||||||||||||||||||||||    
T  8984324 gctatgaatgcatcacgattagcctagatgcagagaaattaaact 8984368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University