View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_25 (Length: 375)
Name: NF12991_low_25
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 3463079 - 3462851
Alignment:
| Q |
21 |
acagaaaaggtatgaatatttcaaaagaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaaata |
120 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3463079 |
acagaaaaggtatgaatattaaaaaagaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaaata |
3462980 |
T |
|
| Q |
121 |
aattccaccgctatcgtaatccaa---tacctatggctatgaaaacgtacccataaatcgaagaaaagtcaatggtcttgtctcttcacacacgcataaa |
217 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3462979 |
aattccaccgctatcgtaatccaatactacctatgactatgaaaacgtacacataaatcgaagaaaagtcaatggtcttgtctcttcacacacgcataaa |
3462880 |
T |
|
| Q |
218 |
tataactccataactcccatttcccattc |
246 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
3462879 |
tataactccataactcccatttcccattc |
3462851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 3462790 - 3462722
Alignment:
| Q |
307 |
tatatagcaatagtagcatgaaagacatgaaacttgtttggtccccagagagagcaactaactcataca |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3462790 |
tatatagcaatagtagcatgaaagacatgaaacttgtttggtccccagagagagcaactaactcataca |
3462722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 375
Target Start/End: Complemental strand, 3452747 - 3452703
Alignment:
| Q |
331 |
acatgaaacttgtttggtccccagagagagcaactaactcataca |
375 |
Q |
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| T |
3452747 |
acatgaaactagtatggtccccagagagagcaacaaactcataca |
3452703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 124
Target Start/End: Complemental strand, 4037728 - 4037628
Alignment:
| Q |
21 |
acagaaaaggtatgaatatttcaaaagaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaaata |
120 |
Q |
| |
|
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4037728 |
acagaaaaggtatgaatatt---aaaaaagttgacgaagaaagcaccgagaaaatatgaaaataaaacgcggccattactgtttctggaaaagtgaagta |
4037632 |
T |
|
| Q |
121 |
aatt |
124 |
Q |
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|||| |
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|
| T |
4037631 |
aatt |
4037628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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