View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_low_26 (Length: 361)

Name: NF12991_low_26
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_low_26
NF12991_low_26
[»] chr1 (1 HSPs)
chr1 (19-361)||(46364001-46364348)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 46364001 - 46364348
Alignment:
Q  19 aattcagatgcaggatggcatctgcttctacagtgaaagttaaacatattcttgctaatggtgtgtgactattcagagtattctggagcaacacaacnnn 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||       
T  46364001 aattcagatgcaggatggcatctgcttctacagtgaaagttaaacatattcttgctaatggtgtgtgactattcagagtattatggagcaacacaacttt 46364100  T
Q  119 nnnnaaatattaaaaatcgatattttgtaaccaaatgtcga------gtaaagagaaaagacaccatccaaattttgtatttcagctgaaaaaatatgtc 212  Q
        |||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||| |||||||||||||||||||| |    
T  46364101 ttttaaatattaaaaatcgatattttgtaaccaaatgtcgatgtcgagtaaagagaaaagacaccatccaaattttgaatttcagctgaaaaaatatgcc 46364200  T
Q  213 atatttaatataaaatcatgtcttgaataagattaccgtcggatgaagtagtctacgaaaaattaaaaacatttgaaaaggtgttttcttatcaacaaag 312  Q
    | |||||||||| | |||||| ||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  46364201 acatttaatataca-tcatgttttgaataagattaccttcggatgaaggagtctacgaaaaattaaaaaaatttgaaaaggtgttttcttatcaacaaag 46364299  T
Q  313 tgccatttagtaaactaaacaattgactggttaatgaatttcactataa 361  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  46364300 tgccaattagtaaactaaacaattgactgattaatgaatttcactataa 46364348  T

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