View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12991_low_29 (Length: 343)
Name: NF12991_low_29
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 42743886 - 42743562
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42743886 |
gttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
42743787 |
T |
|
| Q |
107 |
gtcaagatgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
42743786 |
gtcaagatgcagatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttca |
42743687 |
T |
|
| Q |
207 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42743686 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
42743587 |
T |
|
| Q |
307 |
aacctggaaccttggacgctcacag |
331 |
Q |
| |
|
||||||||||||||||||||||||| |
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|
| T |
42743586 |
aacctggaaccttggacgctcacag |
42743562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 42753245 - 42752921
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42753245 |
gttgccaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
42753146 |
T |
|
| Q |
107 |
gtcaagatgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttta |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
42753145 |
gtcaagatgcagatattttggctggttttgaagctgcaataagtgatggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttca |
42753046 |
T |
|
| Q |
207 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42753045 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
42752946 |
T |
|
| Q |
307 |
aacctggaaccttggacgctcacag |
331 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
42752945 |
aacctggaaccttggacgctcacag |
42752921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 317
Target Start/End: Complemental strand, 42717258 - 42716951
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
106 |
Q |
| |
|
||||| |||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| | || |
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|
| T |
42717258 |
gttgctaatgcaagtgtatttggctatggcaatggaacagcaagtggtggatcgccaaaagcacgagttgtagcctataaggtttgttggga---ttcat |
42717162 |
T |
|
| Q |
107 |
gtcaagatgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttta |
206 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | || |||||||||||||||| |
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|
| T |
42717161 |
gttatgatgcagatattttggctggttttgaagctgccataagtgatggtgtcgacgtgctttcagtgtctttgggtggtgattttcctgttgaatttta |
42717062 |
T |
|
| Q |
207 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||| |||||| | |
|
|
| T |
42717061 |
cgatagcagtatttccatagggtctttccatgcagttgccaataacataattgttgtggctgctggaggaaattcaggacctgctcctagtactgtatcc |
42716962 |
T |
|
| Q |
307 |
aacctggaacc |
317 |
Q |
| |
|
||| ||||||| |
|
|
| T |
42716961 |
aacttggaacc |
42716951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 331
Target Start/End: Original strand, 42734627 - 42734948
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
106 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||||| | | | | |
|
|
| T |
42734627 |
gttgctaatgcaagtgtatttggctatggaaatggaacagcaagtggtggatcgccaaaagcacgagtttccgcctataaggtttgttggg--gttcg-t |
42734723 |
T |
|
| Q |
107 |
gtcaagatgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttta |
206 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||| || | || |||||||||||||| | |
|
|
| T |
42734724 |
gttatgatgcagatattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcagtgtctttgagtggtgattttcctgttgaatttca |
42734823 |
T |
|
| Q |
207 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
306 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
42734824 |
cgatagcagtatttccatagggtctttccatgcagttgccaacaacataattgttgtggcttctggaggtaattcaggaccttcttctaacactgtagca |
42734923 |
T |
|
| Q |
307 |
aacctggaaccttggacgctcacag |
331 |
Q |
| |
|
||| ||||||| |||| ||||||| |
|
|
| T |
42734924 |
aacatggaaccgtggatcctcacag |
42734948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 7 - 331
Target Start/End: Complemental strand, 42762867 - 42762543
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
106 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
42762867 |
gttgctaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgg---gatggat |
42762771 |
T |
|
| Q |
107 |
gtcaagatgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggta---gaaatattcctgttgaatt |
203 |
Q |
| |
|
|| | |||||||| |||||||||||||||||||||||||||||||| ||||| || |||||||| ||||||||||||| | | | | |||| |
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|
| T |
42762770 |
gttatgatgcagacattttggctggttttgaagctgccataagtgatggtgttgatgtgctttcggtgtctttgggtagtggtggtttagcccaagaata |
42762671 |
T |
|
| Q |
204 |
ttacaatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgta |
303 |
Q |
| |
|
|| | | | ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| |||||| |
|
|
| T |
42762670 |
ttcccaaaacagtatttccataggatcttttcatgcagttgccaacaacatcattgttgtggcttctggaggtaattcaggacctgttcctagtactgta |
42762571 |
T |
|
| Q |
304 |
gcaaacctggaaccttggacgctcacag |
331 |
Q |
| |
|
| ||| ||||||||||||||||||||| |
|
|
| T |
42762570 |
tccaacttggaaccttggacgctcacag |
42762543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 42769756 - 42769667
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgg |
96 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||| |
|
|
| T |
42769756 |
gttgcaaatgcaagtgtatttggcaatggcctaggaacagcaagtggtggatcacctaacgcacgagttgcggcctataaggtatgttgg |
42769667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 245
Target Start/End: Complemental strand, 42769633 - 42769506
Alignment:
| Q |
115 |
gcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaattttacaatagca |
214 |
Q |
| |
|
||||| |||||||||||||| |||||||||||| ||||||||| || ||| |||| | |||| ||||| | | ||| || |||||||| | |||| |
|
|
| T |
42769633 |
gcagacattttggctggtttcgaagctgccatacttgacggtgttgatgtgatttcggcgtctgtgggtgg---tgatcccgtagaattttatgaaagca |
42769537 |
T |
|
| Q |
215 |
gtatttccatagggtctttccatgcagttgc |
245 |
Q |
| |
|
||||| | ||||||||||||||||||||||| |
|
|
| T |
42769536 |
gtattgctatagggtctttccatgcagttgc |
42769506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 7 - 323
Target Start/End: Original strand, 23040588 - 23040904
Alignment:
| Q |
7 |
gttgcaaatgcaagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggat |
106 |
Q |
| |
|
||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||| || |
|
|
| T |
23040588 |
gttgctaatgcgagtgtatttggcaatggccgaggaacagcaagtggtggatcaccaaaagctcgagttgcagcctataaggtttgctggggggatttat |
23040687 |
T |
|
| Q |
107 |
gtcaagatgcagatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagtgtctttgggtagaaatattcctgttgaatttta |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| ||||| || || |||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
23040688 |
gtcatgatgcagatattttggctggttttgaagctgcaataagtgatggtgttgatgtactttcagtgtctttgggtagaaattttcctgttgaatttca |
23040787 |
T |
|
| Q |
207 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtggctgctggaggaaattcaggaccttctcctaacactgtagca |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||| |||||| | |
|
|
| T |
23040788 |
caatagcagtatttccatagggtctttccatgcagttgccaacaacatcattgttgtgtctggtggaggaaattcaggacctgatcctagtactgtatcc |
23040887 |
T |
|
| Q |
307 |
aacctggaaccttggac |
323 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
23040888 |
aacttggaaccttggac |
23040904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 42313818 - 42313973
Alignment:
| Q |
18 |
aagtgtatttggcaatggaaatggaacagcaagtggtggatcaccaaaagcacgagttgcagcctataaggtttgttgggacgatggatgtcaagatgca |
117 |
Q |
| |
|
|||||| | ||| ||||| ||||| || |||| ||||| || |||||||| | ||||||||||| || || |||||| | | ||| || ||||||| |
|
|
| T |
42313818 |
aagtgtttatggaaatggtaatggcactgcaaaaggtggttctccaaaagctcatgttgcagcctacaaagtgtgttggaaaggtggctgctcagatgca |
42313917 |
T |
|
| Q |
118 |
gatattttggctggttttgaagctgccataagtgacggtgtcgacgtgctttcagt |
173 |
Q |
| |
|
||| | || |||||||||||||||||||||||||||||||| || ||||| ||||| |
|
|
| T |
42313918 |
gatgtcttagctggttttgaagctgccataagtgacggtgttgatgtgctctcagt |
42313973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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