View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12991_low_3 (Length: 826)
Name: NF12991_low_3
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 761; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 19 - 818
Target Start/End: Original strand, 4300935 - 4301737
Alignment:
| Q |
19 |
ggctttccactaacgaatactatgagccgcgacaaatcagtctcctaatatgttcagtcactgatacatattgttagtgtggaggagactgatttgttgg |
118 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4300935 |
ggctttccactaacgaatactatgatccgcgacaaatcagtctcctaatatgttcggtcactgatacatattgttagtgtggaggagactgatttgttgg |
4301034 |
T |
|
| Q |
119 |
atgagatgatagacgatggctttccactaactacagaacctaatatgctacaagagctgatatctccaccaaatattgttccctgtagagcaaccgaccc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4301035 |
atgagatgatagacgatggctttccactaactacagaacctaatatgctacaagagctgatatctccaccaaatattgttccctgtagagcaaccgaccc |
4301134 |
T |
|
| Q |
219 |
taagtatgccaataatgaagtttatgtagatctagtagaacgaaaccaggacagcatgccagcaaaaactcctattgcagaagtttcatcaa---gttct |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4301135 |
taagtatgccaataatgaagtttatgtagatcttgtagaacgaaaccaggacagcatgccagcaaaaactcctattgcagaagtttcatcaacaagttct |
4301234 |
T |
|
| Q |
316 |
gttaatggagctctaagcgaggttcaatctagttcgtctcccgtggaagcatcccaaatgcacaatggatatagtagtgaaggaaagaaaggttcagctg |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4301235 |
gttaatggagctctaagcgaggttcaatctagttcgtctcccgtggaagcatcccaaatgcacaatggatatagtagtgaaggaaagaaaggttcagctg |
4301334 |
T |
|
| Q |
416 |
aaagccacaacattcacgaggctaattatacagaagacggtatcagaaatcaaccttgttccaattttaatattaccgcaacaatctcaccgccaccaga |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4301335 |
aaagccacaacattcacgaggctaattatacagaagacggtatcagaaatcaacctcgttccaattttaatattaccgcaacaatctcaccgccaccaga |
4301434 |
T |
|
| Q |
516 |
acctctggacaccaagatgcaggcggcggcggctcatccacaaccaacgtcgacggcatcatatgggcttgagacaacgaagggttccatcatagcaaaa |
615 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4301435 |
acctccggacaccaagatgcaggcggcggcggctcatccacaaccaacgtcgacggcatcatatgggcttgagacaacgaagggctccatcatagcaaaa |
4301534 |
T |
|
| Q |
616 |
cgggtgtgtttcatggttaaattagtttggagaccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaac |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4301535 |
cgggtgtgtttcatggttaaattagtttggagaccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaac |
4301634 |
T |
|
| Q |
716 |
ataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatatt |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
4301635 |
ataagtcaaattccaagaaagatgattctgaagacattgatgaagccaattctgaagtgtatgtcttgagttttgctagatacaagaatatagtgatgtt |
4301734 |
T |
|
| Q |
816 |
gtt |
818 |
Q |
| |
|
||| |
|
|
| T |
4301735 |
gtt |
4301737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 33 - 149
Target Start/End: Original strand, 4300832 - 4300948
Alignment:
| Q |
33 |
gaatactatgagccgcgacaaatcagtctcctaatatgttcagtcactgatacatattgttagtgtggaggagactgatttgttggatgagatgatagac |
132 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4300832 |
gaatactatgagccgcgacaaatcagtctcctaatatgttcagtcaccgatacatattgttagtgtggagtagactgatttgttggatgagatgatagac |
4300931 |
T |
|
| Q |
133 |
gatggctttccactaac |
149 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
4300932 |
gatggctttccactaac |
4300948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 255 - 399
Target Start/End: Original strand, 19704447 - 19704594
Alignment:
| Q |
255 |
agaacgaaaccaggacagcatgccagcaaaaactcctattgcagaagtttcatcaa---gttctgttaatggagctctaagcgaggttcaatctagttcg |
351 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
19704447 |
agaacaaaaccaggacagaatgccagcaaaagctcctattgcagaagtttcatcaacaggttctgttaacggagctctaagtgaggttcaatctagttcg |
19704546 |
T |
|
| Q |
352 |
tctcccgtggaagcatcccaaatgcacaatggatatagtagtgaagga |
399 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19704547 |
tctccagtggaagcatcccaaatgcacgatggatatagtagtgaagga |
19704594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 113 - 198
Target Start/End: Original strand, 45962504 - 45962589
Alignment:
| Q |
113 |
tgttggatgagatgatagacgatggctttccactaactacagaacctaatatgctacaagagctgatatctccaccaaatattgtt |
198 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||| ||||| |||| |||||||||||| |
|
|
| T |
45962504 |
tgttggatgagatgatagacaatggctttccactaactacagaacctaatatcctgcaagagatgatagctccgccaaatattgtt |
45962589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 8915943 - 8915887
Alignment:
| Q |
195 |
tgttccctgtagagcaaccgaccctaagtatgccaataatgaagtttatgtagatct |
251 |
Q |
| |
|
||||||||| ||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8915943 |
tgttccctggagaacagtcgaccataagtatgccaataatgaagtttatgtagatct |
8915887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 259
Target Start/End: Original strand, 45962664 - 45962728
Alignment:
| Q |
195 |
tgttccctgtagagcaaccgaccctaagtatgccaataatgaagtttatgtagatctagtagaac |
259 |
Q |
| |
|
||||||||| ||| || | || || |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
45962664 |
tgttccctggagaacagctgatccaaagtatgccaataatgaagtttatgtagatcttgtagaac |
45962728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 8916071 - 8916017
Alignment:
| Q |
144 |
actaactacagaacctaatatgctacaagagctgatatctccaccaaatattgtt |
198 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| |||| ||||||||||||||||| |
|
|
| T |
8916071 |
actaactacaaaacctaatatgatgcaagagaggatagctccaccaaatattgtt |
8916017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 3e-44; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 649 - 772
Target Start/End: Complemental strand, 33959167 - 33959044
Alignment:
| Q |
649 |
ccattcattgcatcatcagttgagaaatcaatcaaagccaccaatggttatgtttcacgaaaggaacataagtcaaattccaagaaagatgattctgaag |
748 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||||| | ||| ||||||||||||||| |
|
|
| T |
33959167 |
ccattcattgcatcatcagttgagaaatcaatcaaagcaaacaatggttatgtttcacgaaaggagcataagtcaaatacaaagcaagatgattctgaag |
33959068 |
T |
|
| Q |
749 |
acattgatgaagccaattctgaag |
772 |
Q |
| |
|
|||| ||||||||||| ||||||| |
|
|
| T |
33959067 |
acatagatgaagccaagtctgaag |
33959044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 764 - 812
Target Start/End: Original strand, 40668093 - 40668141
Alignment:
| Q |
764 |
attctgaagtgtatgtcttgagttttgctagatacaagaatatagtgat |
812 |
Q |
| |
|
||||||| || ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40668093 |
attctgaggtttatgtcttgagttttgctagacacaagaatatagtgat |
40668141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 89 - 163
Target Start/End: Original strand, 23571181 - 23571255
Alignment:
| Q |
89 |
ttgttagtgtggaggagactgatttgttggatgagatgatagacgatggctttccactaactacagaacctaata |
163 |
Q |
| |
|
||||| || ||||| ||||||||||||||||||| ||| ||||| | | |||||||||||||||||||||||||| |
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|
| T |
23571181 |
ttgtttgtatggagaagactgatttgttggatgatatgttagacaacgactttccactaactacagaacctaata |
23571255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 217 - 259
Target Start/End: Original strand, 23571386 - 23571428
Alignment:
| Q |
217 |
cctaagtatgccaataatgaagtttatgtagatctagtagaac |
259 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
23571386 |
cctatgtatgccaataatgaagtttgtgtagatctagttgaac |
23571428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 213 - 251
Target Start/End: Original strand, 7634621 - 7634659
Alignment:
| Q |
213 |
cgaccctaagtatgccaataatgaagtttatgtagatct |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7634621 |
cgaccctaagtatgccaataatgaagtttatgtagatct |
7634659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 144 - 198
Target Start/End: Original strand, 7634475 - 7634529
Alignment:
| Q |
144 |
actaactacagaacctaatatgctacaagagctgatatctccaccaaatattgtt |
198 |
Q |
| |
|
|||||||||| ||||||||||| | |||||| |||| ||||||||||||||||| |
|
|
| T |
7634475 |
actaactacaaaacctaatatgatgcaagagaggatagctccaccaaatattgtt |
7634529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 437 - 491
Target Start/End: Complemental strand, 442692 - 442638
Alignment:
| Q |
437 |
ctaattatacagaagacggtatcagaaatcaaccttgttccaattttaatattac |
491 |
Q |
| |
|
|||||||||||||||| |||||||| | ||||||| |||||||||||| |||||| |
|
|
| T |
442692 |
ctaattatacagaagatggtatcaggagtcaacctggttccaattttagtattac |
442638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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