View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12991_low_30 (Length: 320)

Name: NF12991_low_30
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12991_low_30
NF12991_low_30
[»] chr3 (5 HSPs)
chr3 (1-316)||(55211834-55212148)
chr3 (182-316)||(30911921-30912055)
chr3 (235-316)||(32414655-32414736)
chr3 (189-265)||(36326375-36326451)
chr3 (272-316)||(36326448-36326492)
[»] chr7 (2 HSPs)
chr7 (182-316)||(42513212-42513346)
chr7 (189-316)||(38572361-38572488)
[»] chr5 (2 HSPs)
chr5 (179-316)||(671325-671462)
chr5 (182-316)||(8123394-8123528)
[»] chr1 (2 HSPs)
chr1 (182-314)||(18584038-18584170)
chr1 (182-310)||(13087573-13087700)
[»] chr6 (5 HSPs)
chr6 (188-316)||(4834589-4834719)
chr6 (182-313)||(13886454-13886585)
chr6 (193-316)||(7415516-7415639)
chr6 (180-309)||(33242714-33242842)
chr6 (209-316)||(7426479-7426586)
[»] chr2 (1 HSPs)
chr2 (226-316)||(31211599-31211689)


Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 55212148 - 55211834
Alignment:
Q  1 tctagattctatgtaccttcataacttttgtacctctaaaataaattatttcaagttcaaacacatgaatcattcgacgaagtcagagcagtcttctcaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  55212148 tctagattctatgtaccttcataacttttgtacctctaaaataaattatttcaagttcaaacagatgaatcattcgacgaagtcagagtagtcttctcaa 55212049  T
Q  101 cgtttgtctaagaaagcctataagtgttcataaaggcaatcatatattgatgccatggaaatttggatttcttgcgctaactgatgggatatttagaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||||||||||    
T  55212048 cgtttgtctaagaaagcctataagtgttcataaaggcaatcatatattgttgccatgtaaatttggatttcttgcgc-aactgataggatatttagaata 55211950  T
Q  201 aggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatattggtaggagataatattgag 300  Q
    |||| ||||||||| ||||||| | ||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||| ||||||||||||    
T  55211949 aggagcactaatgtggcgactcggctagttctaaaagttatcacgactcatcttaatctaaaaggatccataaggtatattggtaggggataatattgag 55211850  T
Q  301 tatgttagggtgcact 316  Q
    ||||||||||||||||    
T  55211849 tatgttagggtgcact 55211834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 30911921 - 30912055
Alignment:
Q  182 tgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatatt 281  Q
    |||| ||||| ||||||||| ||  ||||||||   ||||| |||||||||| ||||||| | ||||||||||||||||||||||||   ||  ||| ||    
T  30911921 tgataggatacttagaataatgagtactaatgtgatgactcggttagttctagaagttattatgactcaccttaatctagaaggatctaaaatatatctt 30912020  T
Q  282 ggtaggagataatattgagtatgttagggtgcact 316  Q
    | |||| ||||||||||||||||||||||||||||    
T  30912021 gttaggggataatattgagtatgttagggtgcact 30912055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 32414655 - 32414736
Alignment:
Q  235 aagttatcacgactcaccttaatctagaaggatccgtaaggtatattggtaggagataatattgagtatgttagggtgcact 316  Q
    ||||||| | |||||||||||| ||| |||||||   |||||||||||   || ||||||||| ||||||||| ||||||||    
T  32414655 aagttattatgactcaccttaacctataaggatctagaaggtatattgtctggggataatattaagtatgttatggtgcact 32414736  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 265
Target Start/End: Original strand, 36326375 - 36326451
Alignment:
Q  189 atatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaagg 265  Q
    ||||||||||||| ||  | |||||| | ||||||  |||||||| ||||||| | ||||||| |||||||||||||    
T  36326375 atatttagaataatgagtattaatgtggtgactcatctagttctagaagttattatgactcacattaatctagaagg 36326451  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 272 - 316
Target Start/End: Original strand, 36326448 - 36326492
Alignment:
Q  272 aaggtatattggtaggagataatattgagtatgttagggtgcact 316  Q
    ||||||| ||| |||| ||| ||||||||||||||||||||||||    
T  36326448 aaggtatcttgttaggggatgatattgagtatgttagggtgcact 36326492  T

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Target: chr7 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 182 - 316
Target Start/End: Complemental strand, 42513346 - 42513212
Alignment:
Q  182 tgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatatt 281  Q
    |||| |||||||||||||||||| ||||||||| | ||||||  |||||||| ||||||| | ||||||||||||||||||||||||   ||||| ||||    
T  42513346 tgataggatatttagaataaggagcactaatgtggtgactcatctagttctagaagttattatgactcaccttaatctagaaggatctagaaggtctatt 42513247  T
Q  282 ggtaggagataatattgagtatgttagggtgcact 316  Q
    | |||| ||||||||||||||||||||||| ||||    
T  42513246 gttaggggataatattgagtatgttagggtacact 42513212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 189 - 316
Target Start/End: Complemental strand, 38572488 - 38572361
Alignment:
Q  189 atatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatattggtagga 288  Q
    ||||||||||||| ||  ||||||||   ||||||| |||||||| ||||||| | |||||||||||||||| |||||||   ||||||| ||| ||||     
T  38572488 atatttagaataatgagtactaatgtgctgactcagctagttctagaagttattatgactcaccttaatctaaaaggatctagaaggtatcttgttaggg 38572389  T
Q  289 gataatattgagtatgttagggtgcact 316  Q
    |||||||||||||| |||||||| ||||    
T  38572388 gataatattgagtaagttagggtacact 38572361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 179 - 316
Target Start/End: Original strand, 671325 - 671462
Alignment:
Q  179 aactgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtat 278  Q
    ||||||| |||||||||||||||||| || |||| ||| ||||| | || ||||| | ||||| | ||||||||||||||||||||||||| |||| |||    
T  671325 aactgataggatatttagaataaggagcattaatatagtgactcggctaattctagatgttattatgactcaccttaatctagaaggatccataagatat 671424  T
Q  279 attggtaggagataatattgagtatgttagggtgcact 316  Q
    |||| |||| |||||||||||||| |||||||| ||||    
T  671425 attgttaggggataatattgagtaggttagggtacact 671462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 182 - 316
Target Start/End: Original strand, 8123394 - 8123528
Alignment:
Q  182 tgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatatt 281  Q
    |||| |||||||||||||||||| ||||||| | | ||||||  |||||||| ||||||| | |||| |||||||||||||||||||   ||| | ||||    
T  8123394 tgataggatatttagaataaggagcactaatctggtgactcatctagttctagaagttattatgactgaccttaatctagaaggatctagaagatctatt 8123493  T
Q  282 ggtaggagataatattgagtatgttagggtgcact 316  Q
    | |||| ||||||||||||||||||||||| ||||    
T  8123494 gttaggggataatattgagtatgttagggtacact 8123528  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 18584170 - 18584038
Alignment:
Q  182 tgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatatt 281  Q
    |||| |||||||||||||||||| || |||||| | | || || ||||| |||||||||| | ||||||||||||||||||||||||   ||||||||||    
T  18584170 tgataggatatttagaataaggagcattaatgtggtggcttagctagttataaaagttattatgactcaccttaatctagaaggatctaaaaggtatatt 18584071  T
Q  282 ggtaggagataatattgagtatgttagggtgca 314  Q
      |||| ||||||||||||||||||||||||||    
T  18584070 attaggggataatattgagtatgttagggtgca 18584038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 13087573 - 13087700
Alignment:
Q  182 tgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatatt 281  Q
    |||| ||||||| |||||||||| || |||||| | ||||| | |||||||| ||||||| | ||||||||||||||||| | ||||   ||||||||||    
T  13087573 tgataggatattcagaataaggagcattaatgtggtgactcggctagttctagaagttattatgactcaccttaatctag-acgatctagaaggtatatt 13087671  T
Q  282 ggtaggagataatattgagtatgttaggg 310  Q
    | |||| |||||||| |||||||||||||    
T  13087672 gttaggggataatatcgagtatgttaggg 13087700  T

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Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 4834589 - 4834719
Alignment:
Q  188 gatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaag--gtatattggta 285  Q
    |||||||||||||| ||  || ||||| | |||||||| ||||||| ||||||| | ||||||||||||||||||||||||   |||  |||| ||  ||    
T  4834589 gatatttagaataatgactacgaatgtggtgactcagtaagttctagaagttattatgactcaccttaatctagaaggatctaaaaggagtatcttatta 4834688  T
Q  286 ggagataatattgagtatgttagggtgcact 316  Q
    || ||||||||||||||||||||||||||||    
T  4834689 ggggataatattgagtatgttagggtgcact 4834719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 13886454 - 13886585
Alignment:
Q  182 tgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatatt 281  Q
    |||| ||||| |||||||||||| ||||||||| | ||||| | |||||||| || |||| | ||||||||||||||||||| ||||   ||||||||||    
T  13886454 tgataggatagttagaataaggagcactaatgtggtgactctgctagttctataaattattatgactcaccttaatctagaaagatctaaaaggtatatt 13886553  T
Q  282 ggtaggagataatattgagtatgttagggtgc 313  Q
    | || | | ||||||| |||||||||||||||    
T  13886554 gttaaggggtaatattaagtatgttagggtgc 13886585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 7415516 - 7415639
Alignment:
Q  193 ttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatattggtaggagata 292  Q
    ||||||||| ||  |||||||| | ||||||| |||||||| ||  ||| | |||||| |||||| ||||||||||   ||  ||| ||| |||| ||||    
T  7415516 ttagaataatgagtactaatgtggtgactcagctagttctagaaaatattatgactcatcttaatttagaaggatctagaaattatcttgttaggggata 7415615  T
Q  293 atattgagtatgttagggtgcact 316  Q
    ||||||||||||||| ||||||||    
T  7415616 atattgagtatgttatggtgcact 7415639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 309
Target Start/End: Original strand, 33242714 - 33242842
Alignment:
Q  180 actgatgggatatttagaataaggaacactaatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtata 279  Q
    |||||| ||||||| |||||||||| ||||||| | | ||||||| |||||||| ||||| | | || ||| |||| |||| ||||||    |||  |||    
T  33242714 actgataggatatt-agaataaggagcactaatatggtgactcagctagttctagaagttgttatgagtcatcttagtctataaggatttagaagacata 33242812  T
Q  280 ttggtaggagataatattgagtatgttagg 309  Q
    ||| |||| |||||||||||||||||||||    
T  33242813 ttgttaggggataatattgagtatgttagg 33242842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 7426479 - 7426586
Alignment:
Q  209 taatgtagcgactcagttagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatattggtaggagataatattgagtatgttag 308  Q
    |||||| | ||||||| |||||||| ||  ||| |  ||||| |||||||||| ||||||   ||| ||| ||| |||| |||||||||||||||||||     
T  7426479 taatgtggtgactcagctagttctagaaaatattataactcatcttaatctagtaggatctagaagttatcttgttaggggataatattgagtatgttat 7426578  T
Q  309 ggtgcact 316  Q
    ||||||||    
T  7426579 ggtgcact 7426586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 226 - 316
Target Start/End: Original strand, 31211599 - 31211689
Alignment:
Q  226 tagttctaaaagttatcacgactcaccttaatctagaaggatccgtaaggtatattggtaggagataatattgagtatgttagggtgcact 316  Q
    |||||||| ||||| | | ||||||| |||||||||||||||    ||| ||||||| |||| |||||||||||||||||||| |||||||    
T  31211599 tagttctagaagttgttatgactcactttaatctagaaggatttagaagatatattgttaggggataatattgagtatgttagagtgcact 31211689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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