View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_34 (Length: 294)
Name: NF12991_low_34
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 23257992 - 23258187
Alignment:
| Q |
82 |
aaaaactattatctataacggcttactaaagcttatttccaatgccattaaaaat--actaagacttatttccattctactttaatttggaggagggaag |
179 |
Q |
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|||||||| | ||||||||| |||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23257992 |
aaaaactactgtctataacgacttattgaagcttatttccaatgccataaaagaagaactaaaacttatttccattctactttaatttggaggagggaag |
23258091 |
T |
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| Q |
180 |
aaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgcagaactgtgggtgacagtgccttc |
275 |
Q |
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| T |
23258092 |
aaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatcaacattgaaagcagcctgcagaactgtaggtgatagtgccttc |
23258187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 82 - 275
Target Start/End: Original strand, 23275870 - 23276065
Alignment:
| Q |
82 |
aaaaactattatctataacggcttactaaagcttatttccaatgccattaaaaat--actaagacttatttccattctactttaatttggaggagggaag |
179 |
Q |
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|||||||| | ||||||||| |||| | |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23275870 |
aaaaactactgtctataacgacttattgaagcttatttccaatgccataaaagaagaactaaaacttatttccattctactttaatttggaggagggaag |
23275969 |
T |
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| Q |
180 |
aaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgcagaactgtgggtgacagtgccttc |
275 |
Q |
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| T |
23275970 |
aaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatcaacattgaaagcagcctgcagaactgtaggtgatagtgccttc |
23276065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 17 - 203
Target Start/End: Original strand, 23268369 - 23268572
Alignment:
| Q |
17 |
caaaaataaattgaggcaatcattcaacttcttttaaatccgaaatagaagtgcagaaa----------------gaaagaaaaaactattatctataac |
100 |
Q |
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| T |
23268369 |
caaaaataaattgaggcaatcattcaatttcttttaaatccaaaatagaagtgtagaaacttaataaagtagaaagaaagaaaaaactattatctataac |
23268468 |
T |
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| Q |
101 |
ggcttactaaagcttatttccaatgccattaaaaatactaaga-cttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcct |
199 |
Q |
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| T |
23268469 |
ggcttagtaaagcttatttgcaatgccattaaaaaaactaaaaacttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcct |
23268568 |
T |
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| Q |
200 |
cttt |
203 |
Q |
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|||| |
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| T |
23268569 |
cttt |
23268572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 82 - 275
Target Start/End: Complemental strand, 11137008 - 11136817
Alignment:
| Q |
82 |
aaaaactattatctataacggcttactaaagcttatttccaatgccattaaaaatactaagacttatttccattctactttaatttggaggagggaagaa |
181 |
Q |
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|||||||||| ||||||||||||| |||| | ||||| || |||||| ||||||| || ||||| ||||||||||||| ||||||||||||||||||| |
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| T |
11137008 |
aaaaactattgtctataacggcttgttaaaacatattttcattgccataaaaaata--aaaacttaattccattctacttcaatttggaggagggaagaa |
11136911 |
T |
|
| Q |
182 |
aatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgcagaactgtgggtgacagtgccttc |
275 |
Q |
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||||||||| || |||||||||||||||||||||||||||||||| ||||| |||||||||||||| || |||||||| ||||| || |||||| |
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| T |
11136910 |
aatggcatcggcagtcctctttgaacggaagagtttctcaacttctggatcgacattgaaagcagcttgtagaactgtaggtgatagcgccttc |
11136817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 144 - 256
Target Start/End: Original strand, 27542695 - 27542807
Alignment:
| Q |
144 |
cttatttccattctactttaatttggaggagggaagaaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaag |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
27542695 |
cttatttccattctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatctacattgaaag |
27542794 |
T |
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| Q |
244 |
cagcctgcagaac |
256 |
Q |
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| T |
27542795 |
cagcctgcagaac |
27542807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 153 - 275
Target Start/End: Original strand, 8985282 - 8985404
Alignment:
| Q |
153 |
attctactttaatttggaggagggaagaaaatggcatcagcggtcctctttgaacggaagagtttctcaacttccggatctacattgaaagcagcctgca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||| |
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| T |
8985282 |
attctactttaatttggaggagggaagaaaatggcatcagcagtcctctttgaacggaagagcttctcaacttctggatctacattgaaagcagtctgca |
8985381 |
T |
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| Q |
253 |
gaactgtgggtgacagtgccttc |
275 |
Q |
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||||| | ||||| || |||||| |
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| T |
8985382 |
gaactctaggtgatagggccttc |
8985404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 122
Target Start/End: Original strand, 8984660 - 8984700
Alignment:
| Q |
82 |
aaaaactattatctataacggcttactaaagcttatttcca |
122 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||| |
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| T |
8984660 |
aaaaactattgtctataacggcttattgaagcttatttcca |
8984700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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