View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12991_low_40 (Length: 241)
Name: NF12991_low_40
Description: NF12991
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12991_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 8 - 223
Target Start/End: Complemental strand, 41837046 - 41836831
Alignment:
| Q |
8 |
gacatcatcaccactgattgaagaagaagacgaattgggaagatgcggcgaagcagcaccatcggcgttagaatctttgttggatgaaatcagaaggttc |
107 |
Q |
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| T |
41837046 |
gacattatcaccactaattgaagaagaagacgaattgggaagatgcggcgaagcagcaccatcggcgttagaatctttgttggatgaaatcagaaggttc |
41836947 |
T |
|
| Q |
108 |
aagcggttcatggaatcgtctaaatctgcaacctcccatgattcaggggctcctccaagatcctctgaagagccctccatagaaagcgacgaagaagaag |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41836946 |
aagcggttcatggaatcgtctaaatctgcaacctcccatgattcaggggctcctccaagatcctctgaagagccctccatagaaagcgacgaagaagaag |
41836847 |
T |
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| Q |
208 |
acgaagaagatgcttc |
223 |
Q |
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||||||||||| |||| |
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| T |
41836846 |
acgaagaagattcttc |
41836831 |
T |
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